Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_000221 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:4189854-4192599 (-) |
| Description | Similar to At5g05130: Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_000221 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 36 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g05130 |
Possesses intrinsic ATP-dependent nucleosome-remodeling activity. | No verified direct reference in this release |
At5g22750 |
Functions in error-free postreplication DNA repair or DNA- damage tolerance (DTT) pathway. |
A homolog of ScRAD5 is involved in DNA repair and homologous recombination in Arabidopsis.2008 · DOI: 10.1104/pp.108.116806 RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana.2010 · DOI: 10.1105/tpc.110.078568
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000209 | protein polyubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.152; coverage=65.323; evalue=3.19e-138; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042789 | mRNA transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=IDA:NTNU_SB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070534 | protein K63-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071168 | protein localization to chromatin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071932 | replication fork reversal | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141119 | chromosomal DNA methylation maintenance following DNA replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.152; coverage=65.323; evalue=3.19e-138; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.152; coverage=65.323; evalue=3.19e-138; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016363 | nuclear matrix | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043596 | nuclear replication fork | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090575 | RNA polymerase II transcription regulator complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003697 | single-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.152; coverage=65.323; evalue=3.19e-138; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004386 | helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008094 | ATP-dependent activity, acting on DNA | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015616 | DNA translocase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031625 | ubiquitin protein ligase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISO:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0062072 | histone H3K9me2/3 reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140234 | histone H3K23 ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140658 | ATP-dependent chromatin remodeler activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0160225 | G-quadruplex unwinding activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G05130 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.419; coverage=99.078; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:6596 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.152; coverage=65.323; evalue=3.19e-138 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:20585 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.253; coverage=62.327; evalue=1.81e-139 | UniProtKB/Swiss-Prot DAT 2026 current_release |