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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_000067
Query referenceOH1004
LocationChr01:1531864-1533867 (+)
DescriptionSimilar to PUB16: U-box domain-containing protein 16 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000067 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g01830 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At1g29340 Functions as an E3 ubiquitin ligase.
The E3 ubiquitin ligase activity of arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense.2006 · DOI: 10.1105/tpc.105.039198
At1g60190 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0234300 Possesses E3 ubiquitin-protein ligase in vitro. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0002237response to molecule of bacterial originBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.573; coverage=104.048; evalue=9.57e-108; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009609response to symbiotic bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.573; coverage=104.048; evalue=9.57e-108; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009610response to symbiotic fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.573; coverage=104.048; evalue=9.57e-108; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009877nodulationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.573; coverage=104.048; evalue=9.57e-108; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010029regulation of seed germinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.091; coverage=98.651; evalue=2.65e-77; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.72; coverage=100.75; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036377arbuscular mycorrhizal associationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.573; coverage=104.048; evalue=9.57e-108; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0098542defense response to other organismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.982; coverage=100.0; evalue=2.53e-116; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.72; coverage=100.75; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.72; coverage=100.75; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.573; coverage=104.048; evalue=9.57e-108; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.982; coverage=100.0; evalue=2.53e-116; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.982; coverage=100.0; evalue=2.53e-116; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.72; coverage=100.75; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G29340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.982; coverage=100.0; evalue=2.53e-116UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G60190KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.091; coverage=98.651; evalue=2.65e-77UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G01830KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.72; coverage=100.75; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0234300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.24; coverage=93.703; evalue=2.3e-111UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmtr:11430446KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.573; coverage=104.048; evalue=9.57e-108UniProtKB/Swiss-Prot DAT 2026 current_release