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基因注释

展示当前基因的功能描述、GO/KEGG 注释及分物种同源证据。命中结果按查询版本、序列来源和比对证据分层显示。

示例 TkA01G624900 LXL04_000258 文献示例 LXL04_039733 TkAUNG001940

查询结果

下载当前结果

基因 IDLXL04_017810
当前查询版本OH1004
位置Chr04:1530781-1532531 (+)
描述Similar to FDM3: Factor of DNA methylation 3 (Arabidopsis thaliana OX%3D3702)
注释来源组装GCA_047496595.1_OSU_TarKok_2.0

功能注释来源：OH1004 · LXL04_017810 · GCA_047496595.1_OSU_TarKok_2.0。

当前查询返回来自 OH1004 注释条目的 11 条 GO 注释和 4 条 KEGG 基因交叉引用；只下载当前查询结果，不据此推断 KEGG 通路成员。

拟南芥 / 水稻参考基因与文献

文献对应拟南芥或水稻参考基因；橡胶草的功能关联来自当前参考组装的蛋白序列比对。

下载当前基因文献

拟南芥

参考基因 ID可能功能对应论文 / DOI
At3g12550 与 FDM4 和 FDM5 关联，参与 RNA 导向的 DNA 甲基化 (RdDM)。
A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation.2012 · DOI: 10.1093/nar/gks034
At1g13790 与 FDM3 和 FDM5 联合作用，实现 RNA 指导的 DNA 甲基化。
A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation.2012 · DOI: 10.1093/nar/gks034
At4g00380 与 IDN2 和 FDM1/IDNL1 形成复合物，这是 RNA 指导的 DNA 甲基化 所需的，并且在 RdDM 途径的下游步骤发挥作用。
A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation.2012 · DOI: 10.1093/nar/gks034
IDN2 and its paralogs form a complex required for RNA-directed DNA methylation.2012 · DOI: 10.1371/journal.pgen.1002693
INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis.2012 · DOI: 10.1073/pnas.1206638109
At1g15910 与 IDN2 和 FDM2/IDNL2 形成复合物，这是 RNA 指导的 DNA 甲基化 所需的，并且在 RdDM 途径的下游步骤发挥作用。
A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation.2012 · DOI: 10.1093/nar/gks034
IDN2 and its paralogs form a complex required for RNA-directed DNA methylation.2012 · DOI: 10.1371/journal.pgen.1002693
INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis.2012 · DOI: 10.1073/pnas.1206638109
At3g48670 与 FDM1/IDNL1 和 FDM2/IDNL2 形成复合物，该复合物对 RNA 定向 DNA 甲基化（RdDM）是必需的，并在 RdDM 通路的下游步骤以及小干扰 RNA（siRNA）形成的下游发挥功能。
IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana.2009 · DOI: 10.1038/nsmb.1690
An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis.2010 · DOI: 10.1111/j.1365-313x.2010.04130.x
IDN2 and its paralogs form a complex required for RNA-directed DNA methylation.2012 · DOI: 10.1371/journal.pgen.1002693
INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis.2012 · DOI: 10.1073/pnas.1206638109
IDN2 has a role downstream of siRNA formation in RNA-directed DNA methylation.2012 · DOI: 10.4161/epi.21237
A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing.2013 · DOI: 10.1016/j.molcel.2012.11.011
RNA-directed DNA methylation requires stepwise binding of silencing factors to long non-coding RNA.2014 · DOI: 10.1111/tpj.12563
Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis.2016 · DOI: 10.1371/journal.pgen.1006026

水稻

当前来源表未检出该物种的同源命中。

GO / KEGG

以下 GO/KEGG 注释源自上述 OH1004 注释条目，保留原始同源转移证据及覆盖度；其来源物种范围与拟南芥/水稻直接比对表不同。

类型ID名称命名空间证据来源
GOGO:0010569regulation of double-strand break repair via homologous recombination生物过程Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=39.623; 覆盖度=61.628; E 值=7.01e-48; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032259methylation生物过程Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=44.882; 覆盖度=59.07; E 值=5.71e-49; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080188gene silencing by siRNA-directed DNA methylation生物过程Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.4; 覆盖度=58.14; E 值=3.04e-50; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleus细胞组分Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.4; 覆盖度=58.14; E 值=3.04e-50; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasm细胞组分Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=39.623; 覆盖度=61.628; E 值=7.01e-48; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membrane细胞组分Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=39.623; 覆盖度=61.628; E 值=7.01e-48; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesma细胞组分Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=40.154; 覆盖度=60.233; E 值=8.31e-48; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA binding分子功能Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=40.154; 覆盖度=60.233; E 值=8.31e-48; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA binding分子功能Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=40.154; 覆盖度=60.233; E 值=8.31e-48; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003725double-stranded RNA binding分子功能Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=40.154; 覆盖度=60.233; E 值=8.31e-48; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008168methyltransferase activity分子功能Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=44.882; 覆盖度=59.07; E 值=5.71e-49; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G13790KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=2; 一致性=44.882; 覆盖度=59.07; E 值=5.71e-49UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G15910KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=5; 一致性=40.154; 覆盖度=60.233; E 值=8.31e-48UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G12550KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.4; 覆盖度=58.14; E 值=3.04e-50UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G00380KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed 同源转移; 命中排序=4; 一致性=39.623; 覆盖度=61.628; E 值=7.01e-48UniProtKB/Swiss-Prot DAT 2026 current_release