RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDTkAUNG055600
Query referenceTK1151
LocationChrUn:15824356-15829438 (-)
DescriptionSimilar to ATX3: Histone-lysine N-methyltransferase ATX3 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_010786 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61740 Histone methyltransferase. No verified direct reference in this release
At5g53430 Histone methyltransferase. No verified direct reference in this release
At4g27910 Histone methyltransferase. No verified direct reference in this release
At1g05830 Histone methyltransferase.
The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions.2008 · DOI: 10.1105/tpc.107.056614
Combinatorial functions of diverse histone methylations in Arabidopsis thaliana flowering time regulation.2014 · DOI: 10.1111/nph.12493

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0134500 Possesses histone H3 methyltransferase activity in vitro.
Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.2014 · DOI: 10.1104/pp.113.228049

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006338chromatin remodelingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.263; coverage=99.165; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.059; coverage=49.165; evalue=1.5e-66; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006357regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.263; coverage=99.165; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009294DNA-mediated transformationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=46.612; coverage=101.67; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.115; coverage=48.956; evalue=2.25e-68; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010228vegetative to reproductive phase transition of meristemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.059; coverage=49.165; evalue=1.5e-66; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032259methylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.263; coverage=99.165; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0040029epigenetic regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.263; coverage=99.165; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048578positive regulation of long-day photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.115; coverage=48.956; evalue=2.25e-68; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.115; coverage=48.956; evalue=2.25e-68; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.263; coverage=99.165; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=46.612; coverage=101.67; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031011Ino80 complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=46.612; coverage=101.67; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048188Set1C/COMPASS complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.263; coverage=99.165; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.263; coverage=99.165; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042054histone methyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.263; coverage=99.165; evalue=0.0; UniProt GO evidence=IEA:RHEAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042800histone H3K4 methyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.059; coverage=49.165; evalue=1.5e-66; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140566histone reader activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.263; coverage=99.165; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140945histone H3K4 monomethyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.115; coverage=48.956; evalue=2.25e-68; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140946histone H3K4 dimethyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.059; coverage=49.165; evalue=1.5e-66; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G05830KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.059; coverage=49.165; evalue=1.5e-66UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G61740KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.263; coverage=99.165; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G27910KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.394; coverage=97.495; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G53430KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=46.612; coverage=101.67; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os09g0134500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.115; coverage=48.956; evalue=2.25e-68UniProtKB/Swiss-Prot DAT 2026 current_release