Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkAUNG002690`
Query reference	TK1151
Location	ChrUn:855660-856336 (-)
Description	Similar to SRS5: Protein SHI RELATED SEQUENCE 5 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_003103 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 17 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75520`	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering.	Functionally redundant SHI family genes regulate Arabidopsis gynoecium development in a dose-dependent manner.2006 · DOI: 10.1111/j.1365-313x.2006.02774.x
`At1g19790`	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering.	Functionally redundant SHI family genes regulate Arabidopsis gynoecium development in a dose-dependent manner.2006 · DOI: 10.1111/j.1365-313x.2006.02774.x Activation tagging of an Arabidopsis SHI-RELATED SEQUENCE gene produces abnormal anther dehiscence and floral development.2010 · DOI: 10.1007/s11103-010-9677-5
`At3g51060`	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering.	STY1 and STY2 promote the formation of apical tissues during Arabidopsis gynoecium development.2002 · DOI: 10.1242/dev.129.20.4707 STY1 regulates auxin homeostasis and affects apical-basal patterning of the Arabidopsis gynoecium.2006 · DOI: 10.1111/j.1365-313x.2006.02775.x Functionally redundant SHI family genes regulate Arabidopsis gynoecium development in a dose-dependent manner.2006 · DOI: 10.1111/j.1365-313x.2006.02774.x Auxin can act independently of CRC, LUG, SEU, SPT and STY1 in style development but not apical-basal patterning of the Arabidopsis gynoecium.2008 · DOI: 10.1111/j.1469-8137.2008.02625.x The Arabidopsis thaliana STYLISH1 protein acts as a transcriptional activator regulating auxin biosynthesis.2010 · DOI: 10.1105/tpc.108.064816 The Arabidopsis thaliana transcriptional activator STYLISH1 regulates genes affecting stamen development, cell expansion and timing of flowering.2012 · DOI: 10.1007/s11103-012-9888-z

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0531600`	Regulates tillering and panicle branching by modulating SPL14/IPA1 transcriptional activity on the downstream TB1 and DEP1 target genes.	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.2019 · DOI: 10.1105/tpc.19.00023

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=88.0; coverage=24.876; evalue=2.91e-27; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=82.353; coverage=25.373; evalue=5.72e-26; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009299	mRNA transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.333; coverage=29.851; evalue=4.41e-26; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009555	pollen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009640	photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009734	auxin-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009851	auxin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048450	floral organ structural organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=82.353; coverage=25.373; evalue=5.72e-26; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048653	anther development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=82.353; coverage=25.373; evalue=5.72e-26; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046982	protein heterodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=29.851; evalue=8.98e-27; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G19790	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.333; coverage=29.851; evalue=4.41e-26	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G75520	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.929; coverage=27.861; evalue=5.32e-29	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G51060	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=29.851; evalue=8.98e-27	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os09g0531600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=82.353; coverage=25.373; evalue=5.72e-26	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4347669	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=82.353; coverage=25.373; evalue=5.72e-26	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	sly:101251254	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=88.0; coverage=24.876; evalue=2.91e-27	UniProtKB/Swiss-Prot DAT 2026 current_release