Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA08G429520`
Query reference	TK1151
Location	Chr08:109137865-109142448 (-)
Description	Similar to TTG1: Protein TRANSPARENT TESTA GLABRA 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_034722 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 22 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24520`	May regulate MYC transcription factors.	GL3 encodes a bHLH protein that regulates trichome development in arabidopsis through interaction with GL1 and TTG1.2000 · DOI: 10.1093/genetics/156.3.1349
`At1g12910`	Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing.	Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering.2008 · DOI: 10.1104/pp.108.124917 LIGHT-REGULATED WD1 and PSEUDO-RESPONSE REGULATOR9 form a positive feedback regulatory loop in the Arabidopsis circadian clock.2011 · DOI: 10.1105/tpc.110.081661
`At3g26640`	Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing.	Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering.2008 · DOI: 10.1104/pp.108.124917 LIGHT-REGULATED WD1 and PSEUDO-RESPONSE REGULATOR9 form a positive feedback regulatory loop in the Arabidopsis circadian clock.2011 · DOI: 10.1105/tpc.110.081661

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009718	anthocyanin-containing compound biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.072; coverage=99.701; evalue=2.97e-153; UniProt GO evidence=NAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.608; coverage=102.09; evalue=0.0; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.608; coverage=102.09; evalue=0.0; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010026	trichome differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.608; coverage=102.09; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.119; coverage=100.0; evalue=1.15e-122; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032880	regulation of protein localization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.608; coverage=102.09; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043153	entrainment of circadian clock by photoperiod	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.072; coverage=99.701; evalue=2.97e-153; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045165	cell fate commitment	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.608; coverage=102.09; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048511	rhythmic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.072; coverage=99.701; evalue=2.97e-153; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048573	photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.072; coverage=99.701; evalue=2.97e-153; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090628	plant epidermal cell fate specification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.608; coverage=102.09; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.608; coverage=102.09; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.119; coverage=100.0; evalue=1.15e-122; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.608; coverage=102.09; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.119; coverage=100.0; evalue=1.15e-122; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016363	nuclear matrix	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.119; coverage=100.0; evalue=1.15e-122; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016604	nuclear body	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.119; coverage=100.0; evalue=1.15e-122; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032991	protein-containing complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.119; coverage=100.0; evalue=1.15e-122; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.119; coverage=100.0; evalue=1.15e-122; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.072; coverage=99.701; evalue=2.97e-153; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.608; coverage=102.09; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030674	protein-macromolecule adaptor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.119; coverage=100.0; evalue=1.15e-122; UniProt GO evidence=ISS:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G12910	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.072; coverage=99.701; evalue=2.97e-153	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G26640	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.575; coverage=99.701; evalue=1.69e-150	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G24520	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.608; coverage=102.09; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:10238	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.119; coverage=100.0; evalue=1.15e-122	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:71833	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.119; coverage=100.0; evalue=1.15e-122	UniProtKB/Swiss-Prot DAT 2026 current_release