Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA08G258000 |
|---|---|
| Query reference | TK1151 |
| Location | Chr08:67261641-67264354 (+) |
| Description | Similar to CSU2: Protein COP1 SUPPRESSOR 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_033457 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 16 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g02330 |
Inhibits E3 ubiquitin-protein ligase activity of COP1, a central repressor of seedling photomorphogenesis. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.938; coverage=101.761; evalue=1.13e-117; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007059 | chromosome segregation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.97; coverage=94.718; evalue=4.26e-23; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010099 | regulation of photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.938; coverage=101.761; evalue=1.13e-117; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031397 | negative regulation of protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.938; coverage=101.761; evalue=1.13e-117; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045292 | mRNA cis splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.97; coverage=94.718; evalue=4.26e-23; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0055121 | response to high fluence blue light stimulus by blue high-fluence system | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.938; coverage=101.761; evalue=1.13e-117; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060629 | regulation of homologous chromosome segregation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.97; coverage=94.718; evalue=4.26e-23; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080022 | primary root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.938; coverage=101.761; evalue=1.13e-117; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000775 | chromosome, centromeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.97; coverage=94.718; evalue=4.26e-23; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.938; coverage=101.761; evalue=1.13e-117; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.97; coverage=94.718; evalue=4.26e-23; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005681 | spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.938; coverage=101.761; evalue=1.13e-117; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.938; coverage=101.761; evalue=1.13e-117; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.227; coverage=94.718; evalue=2.45e-21; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030623 | U5 snRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.97; coverage=94.718; evalue=4.26e-23; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031625 | ubiquitin protein ligase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.938; coverage=101.761; evalue=1.13e-117; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G02330 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.938; coverage=101.761; evalue=1.13e-117 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:51759 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.599; coverage=94.718; evalue=2.15e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:227707 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.97; coverage=94.718; evalue=4.26e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100172237 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.227; coverage=94.718; evalue=2.45e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release |