Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA08G251450`
Query reference	TK1151
Location	Chr08:65651443-65654296 (+)
Description	Similar to SUVH9: Histone-lysine N-methyltransferase family member SUVH9 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_014603 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 17 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g13460`	Histone methyltransferase family member that plays a role in gene silencing.	SRA-domain proteins required for DRM2-mediated de novo DNA methylation.2008 · DOI: 10.1371/journal.pgen.1000280 SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation.2014 · DOI: 10.1038/nature12931 Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis.2016 · DOI: 10.1371/journal.pgen.1006026
`At2g33290`	Histone methyltransferase family member that plays a central role in gene silencing.	Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.2005 · DOI: 10.1038/sj.emboj.7600604 SRA-domain proteins required for DRM2-mediated de novo DNA methylation.2008 · DOI: 10.1371/journal.pgen.1000280 SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation.2014 · DOI: 10.1038/nature12931 Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis.2016 · DOI: 10.1371/journal.pgen.1006026
`At5g04940`	Histone methyltransferase.	Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.2005 · DOI: 10.1038/sj.emboj.7600604
`At2g22740`	Histone methyltransferase.	Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana.2004 · DOI: 10.1007/s00412-004-0275-7 H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases.2005 · DOI: 10.1128/mcb.25.23.10507-10515.2005

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009294	DNA-mediated transformation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.68; coverage=93.548; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032259	methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.468; coverage=73.9; evalue=9.21e-110; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040029	epigenetic regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.895; coverage=93.695; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080188	gene silencing by siRNA-directed DNA methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.68; coverage=93.548; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000775	chromosome, centromeric region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.68; coverage=93.548; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000792	heterochromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.895; coverage=93.695; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.68; coverage=93.548; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005694	chromosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.679; coverage=73.167; evalue=4.96e-106; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.468; coverage=73.9; evalue=9.21e-110; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003690	double-stranded DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.68; coverage=93.548; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008168	methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.468; coverage=73.9; evalue=9.21e-110; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.68; coverage=93.548; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010385	double-stranded methylated DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.468; coverage=73.9; evalue=9.21e-110; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031490	chromatin DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.468; coverage=73.9; evalue=9.21e-110; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042054	histone methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.68; coverage=93.548; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140942	histone H3K9 dimethyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.679; coverage=73.167; evalue=4.96e-106; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140953	histone H3K27 monomethyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.679; coverage=73.167; evalue=4.96e-106; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G73100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.278; coverage=69.062; evalue=1.46e-100	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G33290	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.895; coverage=93.695; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G13460	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.68; coverage=93.548; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G04940	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.468; coverage=73.9; evalue=9.21e-110	UniProtKB/Swiss-Prot DAT 2026 current_release