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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA08G169360
Query referenceTK1151
LocationChr08:44301661-44306686 (+)
DescriptionSimilar to RDR6: RNA-dependent RNA polymerase 6 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032360 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g49500 RNA-dependent RNA polymerase involved in post-transcriptional gene silencing (PTGS).
Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance.2000 · DOI: 10.1016/s0092-8674(00)80863-6
An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus.2000 · DOI: 10.1016/s0092-8674(00)80864-8
Geminivirus VIGS of endogenous genes requires SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants.2004 · DOI: 10.1111/j.1365-313x.2004.02103.x
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis.2004 · DOI: 10.1101/gad.1231804
The Putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and MicroRNA165/166 in Arabidopsis leaf development.2005 · DOI: 10.1105/tpc.105.033449
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis.2005 · DOI: 10.1101/gad.1352605
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis.2005 · DOI: 10.1016/j.cell.2005.11.035
DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7.2006 · DOI: 10.1016/j.cub.2006.03.035
Improperly terminated, unpolyadenylated mRNA of sense transgenes is targeted by RDR6-mediated RNA silencing in Arabidopsis.2007 · DOI: 10.1105/tpc.106.045724
Biochemical activities of Arabidopsis RNA-dependent RNA polymerase 6.2008 · DOI: 10.1074/jbc.m708983200
Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis.2009 · DOI: 10.1371/journal.pone.0004971
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis.2010 · DOI: 10.1038/nsmb.1866
At1g14790 RNA-dependent direct polymerase involved in antiviral silencing.
Analysis of the involvement of an inducible Arabidopsis RNA-dependent RNA polymerase in antiviral defense.2003 · DOI: 10.1094/mpmi.2003.16.3.206
Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis.2009 · DOI: 10.1371/journal.pone.0004971
RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana.2010 · DOI: 10.1073/pnas.0904086107
Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection.2010 · DOI: 10.1105/tpc.109.073056

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0527600 Involved in the RNA silencing pathway.
The small interfering RNA production pathway is required for shoot meristem initiation in rice.2007 · DOI: 10.1073/pnas.0704339104
Os04g0465700 Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). No verified direct reference in this release
Os02g0736200 Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.609; coverage=90.484; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009615response to virusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.609; coverage=90.484; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009616RNAi-mediated antiviral immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009751response to salicylic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.609; coverage=90.484; evalue=0.0; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010025wax biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.609; coverage=90.484; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010267ta-siRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IMP:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010492maintenance of shoot apical meristem identityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.024; coverage=100.417; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016441post-transcriptional gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=TAS:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030422siRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IMP:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031047regulatory ncRNA-mediated gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035194regulatory ncRNA-mediated post-transcriptional gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.024; coverage=100.417; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048366leaf developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048467gynoecium developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048544recognition of pollenBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051607defense response to virusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0060148positive regulation of post-transcriptional gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.609; coverage=90.484; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070549siRNA-mediated gene silencing by inhibition of translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IMP:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031380nuclear RNA-directed RNA polymerase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036464cytoplasmic ribonucleoprotein granuleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003887DNA-directed DNA polymerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003968RNA-directed RNA polymerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G14790KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.609; coverage=90.484; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G49500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.948; coverage=100.25; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0527600KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.024; coverage=100.417; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0736200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.069; coverage=64.023; evalue=2.73e-180UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os04g0465700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.931; coverage=84.307; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release