Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA08G142760 |
|---|---|
| Query reference | TK1151 |
| Location | Chr08:37194210-37199588 (-) |
| Description | Similar to NUP96: Nuclear pore complex protein NUP96 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_032028 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 43 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g80680 |
Contributes to the transfer of mature mRNA from the nucleus to the cytosol. |
A putative nucleoporin 96 Is required for both basal defense and constitutive resistance responses mediated by suppressor of npr1-1,constitutive 1.2005 · DOI: 10.1105/tpc.104.029926
|
At1g10390 |
Nuclear pore complex protein NUP98A. | No verified direct reference in this release |
At1g59660 |
Nuclear pore complex protein NUP98B. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000973 | post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002758 | innate immune response-activating signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006405 | RNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006406 | mRNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.012; coverage=15.675; evalue=7.64e-45; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006606 | protein import into nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006913 | nucleocytoplasmic transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006952 | defense response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006999 | nuclear pore organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009733 | response to auxin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IGI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015031 | protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034398 | telomere tethering at nuclear periphery | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048026 | positive regulation of mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048573 | photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.012; coverage=15.675; evalue=7.64e-45; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048574 | long-day photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051028 | mRNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051292 | nuclear pore complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902446 | regulation of shade avoidance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.012; coverage=15.675; evalue=7.64e-45; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000776 | kinetochore | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.534; coverage=92.823; evalue=4.29e-65; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005635 | nuclear envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005643 | nuclear pore | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.012; coverage=15.675; evalue=7.64e-45; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031080 | nuclear pore outer ring | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031965 | nuclear membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034399 | nuclear periphery | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042405 | nuclear inclusion body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044614 | nuclear pore cytoplasmic filaments | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044615 | nuclear pore nuclear basket | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008139 | nuclear localization sequence binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008236 | serine-type peptidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015288 | porin activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017056 | structural constituent of nuclear pore | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042277 | peptide binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.534; coverage=92.823; evalue=4.29e-65; UniProt GO evidence=IDA:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140693 | molecular condensate scaffold activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IDA:DisProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990841 | promoter-specific chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G10390 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.012; coverage=15.675; evalue=7.64e-45 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G80680 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.3; coverage=97.734; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:4928 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.456; coverage=93.107; evalue=2.98e-65 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:269966 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.307; coverage=61.568; evalue=2.81e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:81738 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.534; coverage=92.823; evalue=4.29e-65 | UniProtKB/Swiss-Prot DAT 2026 current_release |