Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA07G095280 |
|---|---|
| Query reference | TK1151 |
| Location | Chr07:24842609-24843169 (+) |
| Description | Similar to Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Nicotiana tabacum OX%3D4097) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_027806 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 15 GO annotations and 1 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g10380 |
E3 ubiquitin-protein ligase that may be involved in positive regulation of programmed cell death (PCD) by facilitating degradation of negative regulators of PCD. | |
At5g01880 |
RING-H2 finger protein ATL74. | No verified direct reference in this release |
At4g17905 |
Putative RING-H2 finger protein ATL53. | No verified direct reference in this release |
At1g72220 |
RING-H2 finger protein ATL54. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
UniProt: Q9LRB7 |
Functions as an E3 ubiquitin-protein ligase in cooperation with the E2 ubiquitin conjugating enzymes UBC5A and UBC5B. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.066; coverage=37.987; evalue=4.89e-23; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006310 | DNA recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.141; coverage=35.281; evalue=1.19e-29; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.528; coverage=35.281; evalue=1e-33; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015074 | DNA integration | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.528; coverage=35.281; evalue=1e-33; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.0; coverage=5.411; evalue=4.79e-17; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071897 | DNA biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.066; coverage=37.987; evalue=4.89e-23; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.0; coverage=5.411; evalue=4.79e-17; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042575 | DNA polymerase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.066; coverage=37.987; evalue=4.89e-23; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.528; coverage=35.281; evalue=1e-33; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003964 | RNA-directed DNA polymerase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.528; coverage=35.281; evalue=1e-33; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004190 | aspartic-type endopeptidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.528; coverage=35.281; evalue=1e-33; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004519 | endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.528; coverage=35.281; evalue=1e-33; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.066; coverage=37.987; evalue=4.89e-23; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.528; coverage=35.281; evalue=1e-33; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.0; coverage=5.411; evalue=4.79e-17; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G01880 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.0; coverage=5.411; evalue=4.79e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release |