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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA07G078960
Query referenceTK1151
LocationChr07:20594861-20601698 (+)
DescriptionSimilar to KEG: E3 ubiquitin-protein ligase KEG (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027616 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 32 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g13530 Mediates E2-dependent protein ubiquitination.
Powdery mildew resistance conferred by loss of the ENHANCED DISEASE RESISTANCE1 protein kinase is suppressed by a missense mutation in KEEP ON GOING, a regulator of abscisic acid signaling.2008 · DOI: 10.1104/pp.108.127605
At3g23000 CIPK serine-threonine protein kinases interact with CBL proteins.
CIPK7 is involved in cold response by interacting with CBL1 in Arabidopsis thaliana.2011 · DOI: 10.1016/j.plantsci.2011.03.011
At5g18700 Essential protein that regulates phragmoplast microtubule organization during cell plate expansion in cytokinesis during cell division, both somatic and syncytial. No verified direct reference in this release
At4g08500 The MEKK1, MKK1/MKK2 and MPK4 function in a signaling pathway that modulates the expression of genes responding to biotic and abiotic stresses and also plays an important role in pathogen defense by negatively regulating innate immunity.
MAP kinase signalling cascade in Arabidopsis innate immunity.2002 · DOI: 10.1038/415977a
The MKK2 pathway mediates cold and salt stress signaling in Arabidopsis.2004 · DOI: 10.1016/j.molcel.2004.06.023
Phosphorylation of Arabidopsis thaliana MEKK1 via Ca(2+) signaling as a part of the cold stress response.2013 · DOI: 10.1007/s10265-013-0576-0

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009704de-etiolationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.206; coverage=16.192; evalue=2.94e-36; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009788negative regulation of abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010564regulation of cell cycle processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.413; coverage=42.996; evalue=1.98e-25; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016197endosomal transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032940secretion by cellBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045036protein targeting to chloroplastBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.206; coverage=16.192; evalue=2.94e-36; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045324late endosome to vacuole transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048589developmental growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071300cellular response to retinoic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.413; coverage=42.996; evalue=1.98e-25; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904216positive regulation of protein import into chloroplast stromaBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.206; coverage=16.192; evalue=2.94e-36; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.413; coverage=42.996; evalue=1.98e-25; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005769early endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005802trans-Golgi networkCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.206; coverage=16.192; evalue=2.94e-36; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.206; coverage=16.192; evalue=2.94e-36; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.206; coverage=16.192; evalue=2.94e-36; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009707chloroplast outer membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.206; coverage=16.192; evalue=2.94e-36; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.206; coverage=16.192; evalue=2.94e-36; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010006Toc complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.206; coverage=16.192; evalue=2.94e-36; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042995cell projectionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.413; coverage=42.996; evalue=1.98e-25; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004672protein kinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004674protein serine/threonine kinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0106310protein serine kinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0; UniProt GO evidence=IEA:RHEAUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G32250KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.206; coverage=16.192; evalue=2.94e-36UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G13530KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.308; coverage=98.545; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:244859KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.413; coverage=42.996; evalue=1.98e-25UniProtKB/Swiss-Prot DAT 2026 current_release