Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA07G036270`
Query reference	TK1151
Location	Chr07:9668488-9670625 (-)
Description	Similar to PUB8: U-box domain-containing protein 8 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027164 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21350`	Functions as an E3 ubiquitin ligase (By similarity).	A cryptic modifier causing transient self-incompatibility in Arabidopsis thaliana.2007 · DOI: 10.1016/j.cub.2007.03.022
`At1g29340`	Functions as an E3 ubiquitin ligase.	The E3 ubiquitin ligase activity of arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense.2006 · DOI: 10.1105/tpc.105.039198
`At5g01830`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At2g35930`	E3 ubiquitin-protein ligase that negatively regulates water stress response.	Arabidopsis PUB22 and PUB23 are homologous U-Box E3 ubiquitin ligases that play combinatory roles in response to drought stress.2008 · DOI: 10.1105/tpc.108.060699 Negative regulation of PAMP-triggered immunity by an E3 ubiquitin ligase triplet in Arabidopsis.2008 · DOI: 10.1016/j.cub.2008.07.085

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0002237	response to molecule of bacterial origin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.151; coverage=102.817; evalue=6.76e-48; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.35; coverage=96.62; evalue=1.26e-132; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007166	cell surface receptor signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.188; coverage=98.873; evalue=4.13e-49; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009609	response to symbiotic bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.151; coverage=102.817; evalue=6.76e-48; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009610	response to symbiotic fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.151; coverage=102.817; evalue=6.76e-48; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.35; coverage=96.62; evalue=1.26e-132; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009877	nodulation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.151; coverage=102.817; evalue=6.76e-48; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.35; coverage=96.62; evalue=1.26e-132; UniProt GO evidence=NAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0036377	arbuscular mycorrhizal association	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.151; coverage=102.817; evalue=6.76e-48; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.188; coverage=98.873; evalue=4.13e-49; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050777	negative regulation of immune response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.188; coverage=98.873; evalue=4.13e-49; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000028	regulation of photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.188; coverage=98.873; evalue=4.13e-49; UniProt GO evidence=IMP:CACAO	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.35; coverage=96.62; evalue=1.26e-132; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.35; coverage=96.62; evalue=1.26e-132; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.188; coverage=98.873; evalue=4.13e-49; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.151; coverage=102.817; evalue=6.76e-48; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004842	ubiquitin-protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.44; coverage=102.535; evalue=2.88e-49; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.35; coverage=96.62; evalue=1.26e-132; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.188; coverage=98.873; evalue=4.13e-49; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G28830	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.884; coverage=102.254; evalue=1.1e-48	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G46510	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.188; coverage=98.873; evalue=4.13e-49	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G21350	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.35; coverage=96.62; evalue=1.26e-132	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0102700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.44; coverage=102.535; evalue=2.88e-49	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mtr:11430446	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.151; coverage=102.817; evalue=6.76e-48	UniProtKB/Swiss-Prot DAT 2026 current_release