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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA06G402940
Query referenceTK1151
LocationChr06:99743989-99745608 (+)
DescriptionSimilar to LSH6: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_023097 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 13 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g23290 Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (By similarity).
CUP-SHAPED COTYLEDON1 transcription factor activates the expression of LSH4 and LSH3, two members of the ALOG gene family, in shoot organ boundary cells.2011 · DOI: 10.1111/j.1365-313x.2011.04571.x
At2g31160 Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (By similarity).
Organ boundary1 defines a gene expressed at the junction between the shoot apical meristem and lateral organs.2011 · DOI: 10.1073/pnas.1018542108
At1g07090 Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XAV5 Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light. No verified direct reference in this release
Os02g0811000 Transcription factor required for lateral development of the lemma and palea.
TH1, a DUF640 domain-like gene controls lemma and palea development in rice.2012 · DOI: 10.1007/s11103-011-9868-8
Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice.2013 · DOI: 10.1007/s11427-013-4449-5
The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.2016 · DOI: 10.1111/jipb.12441

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009299mRNA transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009416response to light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010199organ boundary specification between lateral organs and the meristemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.194; coverage=93.467; evalue=3e-85; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010492maintenance of shoot apical meristem identityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.194; coverage=93.467; evalue=3e-85; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=90.299; coverage=67.337; evalue=1.25e-79; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048441petal developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.194; coverage=93.467; evalue=3e-85; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048834specification of petal numberBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.194; coverage=93.467; evalue=3e-85; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080050regulation of seed developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=90.299; coverage=67.337; evalue=1.25e-79; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090698post-embryonic plant morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=96.063; coverage=63.819; evalue=8.3e-81; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042803protein homodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=90.299; coverage=67.337; evalue=1.25e-79; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G07090KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.119; coverage=71.859; evalue=3.5e-86UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G31160KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.194; coverage=93.467; evalue=3e-85UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G23290KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=96.063; coverage=63.819; evalue=8.3e-81UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0811000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=90.299; coverage=67.337; evalue=1.25e-79UniProtKB/Swiss-Prot DAT 2026 current_release