Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA06G042380`
Query reference	TK1151
Location	Chr06:11465197-11465718 (-)
Description	Similar to At1g27930: Probable methyltransferase At1g27930 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025760 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67330`	Involved in the methylation of glucuronic acid of different plant cell wall component, but mainly on side chains of arabinogalactans.	Two members of the DUF579 family are responsible for arabinogalactan methylation in Arabidopsis.2019 · DOI: 10.1002/pld3.117
`At1g27930`	Involved in the methylation of glucuronic acid of different plant cell wall component, but mainly on side chains of arabinogalactans.	Two members of the DUF579 family are responsible for arabinogalactan methylation in Arabidopsis.2019 · DOI: 10.1002/pld3.117
`At1g33800`	Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.	Three Arabidopsis DUF579 domain-containing GXM proteins are methyltransferases catalyzing 4-o-methylation of glucuronic acid on xylan.2012 · DOI: 10.1093/pcp/pcs138
`At4g09990`	Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.	Three Arabidopsis DUF579 domain-containing GXM proteins are methyltransferases catalyzing 4-o-methylation of glucuronic acid on xylan.2012 · DOI: 10.1093/pcp/pcs138
`At1g09610`	Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.	Three Arabidopsis DUF579 domain-containing GXM proteins are methyltransferases catalyzing 4-o-methylation of glucuronic acid on xylan.2012 · DOI: 10.1093/pcp/pcs138

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0005976	polysaccharide metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.45; coverage=79.57; evalue=4.61e-73; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006479	protein methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009808	lignin metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.45; coverage=79.57; evalue=4.61e-73; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009827	plant-type cell wall modification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009834	plant-type secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032259	methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.174; coverage=74.194; evalue=6.98e-75; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045491	xylan metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.174; coverage=74.194; evalue=6.98e-75; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045492	xylan biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000139	Golgi membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005576	extracellular region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.174; coverage=74.194; evalue=6.98e-75; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.432; coverage=99.642; evalue=5.89e-117; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005768	endosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005797	Golgi medial cisterna	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005802	trans-Golgi network	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030775	glucuronoxylan 4-O-methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G09610	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.091; coverage=87.097; evalue=9.68e-75	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G27930	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.17; coverage=103.584; evalue=2.51e-119	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G33800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.45; coverage=79.57; evalue=4.61e-73	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G67330	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.432; coverage=99.642; evalue=5.89e-117	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G09990	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.174; coverage=74.194; evalue=6.98e-75	UniProtKB/Swiss-Prot DAT 2026 current_release