Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA05G456640 |
|---|---|
| Query reference | TK1151 |
| Location | Chr05:114395131-114407113 (-) |
| Description | Similar to TRANK1: TPR and ankyrin repeat-containing protein 1 (Homo sapiens OX%3D9606) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_022441 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 39 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g47010 |
Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons (premature termination codon PTC) by associating with the nuclear exon junction complex (EJC) and serving as link between the EJC core and NMD machinery. |
Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.2009 · DOI: 10.1073/pnas.0808902106 Nonsense-mediated mRNA decay factors, UPF1 and UPF3, contribute to plant defense.2011 · DOI: 10.1093/pcp/pcr144
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006283 | transcription-coupled nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IGI:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006353 | DNA-templated transcription termination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006369 | termination of RNA polymerase II transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006386 | termination of RNA polymerase III transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006399 | tRNA metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.276; coverage=9.145; evalue=3.83e-43; UniProt GO evidence=NAS:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008033 | tRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009553 | embryo sac development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.839; coverage=10.161; evalue=4.82e-49; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009875 | pollen-pistil interaction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.839; coverage=10.161; evalue=4.82e-49; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010183 | pollen tube guidance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.839; coverage=10.161; evalue=4.82e-49; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016180 | snRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031123 | RNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.276; coverage=9.145; evalue=3.83e-43; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031124 | mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031126 | sno(s)RNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045005 | DNA-templated DNA replication maintenance of fidelity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045454 | cell redox homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060257 | negative regulation of flocculation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.276; coverage=9.145; evalue=3.83e-43; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.839; coverage=10.161; evalue=4.82e-49; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005657 | replication fork | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030874 | nucleolar chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.276; coverage=9.145; evalue=3.83e-43; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035649 | Nrd1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035861 | site of double-strand break | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.276; coverage=9.145; evalue=3.83e-43; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001147 | transcription termination site sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.839; coverage=10.161; evalue=4.82e-49; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003724 | RNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=HDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004386 | helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.839; coverage=10.161; evalue=4.82e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.839; coverage=10.161; evalue=4.82e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016787 | hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.839; coverage=10.161; evalue=4.82e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019904 | protein domain specific binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033677 | DNA/RNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033678 | 5'-3' DNA/RNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043139 | 5'-3' DNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G15570 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.839; coverage=10.161; evalue=4.82e-49 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:9881 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=25.061; coverage=26.811; evalue=6.97e-59 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:320429 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.306; coverage=26.811; evalue=1.9e-58 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YLR430W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.007; coverage=8.882; evalue=7.84e-45 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2540523 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.276; coverage=9.145; evalue=3.83e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release |