Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA05G332910 |
|---|---|
| Query reference | TK1151 |
| Location | Chr05:81965342-81974663 (-) |
| Description | Similar to MBD9: Methyl-CpG-binding domain-containing protein 9 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_020914 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 50 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g01460 |
Probable transcriptional regulator that acts as a histone acetyltransferase. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006334 | nucleosome assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006352 | DNA-templated transcription initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010223 | secondary shoot formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031048 | regulatory ncRNA-mediated heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031507 | heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033696 | heterochromatin boundary formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043392 | negative regulation of DNA binding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044027 | negative regulation of gene expression via chromosomal CpG island methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=IMP:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048573 | photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050434 | positive regulation of viral transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060729 | intestinal epithelial structure maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=IMP:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141119 | chromosomal DNA methylation maintenance following DNA replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000791 | euchromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000792 | heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000812 | Swr1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005657 | replication fork | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005721 | pericentric heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=IDA:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031213 | RSF complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031934 | mating-type region heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048189 | Lid2 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13; UniProt GO evidence=ISM:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004402 | histone acetyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008327 | methyl-CpG binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034647 | histone H3K4me/H3K4me2/H3K4me3 demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13; UniProt GO evidence=EXP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042393 | histone binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044729 | hemi-methylated DNA-binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0062072 | histone H3K9me2/3 reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140234 | histone H3K23 ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140248 | histone H3K18 ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140751 | histone octamer slider activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11; UniProt GO evidence=IDA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140851 | histone H3K14 ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G01460 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.353; coverage=75.791; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:406350 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.556; coverage=2.944; evalue=1.06e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:51773 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.143; coverage=2.672; evalue=2.2e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2541299 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.189; coverage=10.087; evalue=6.55e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release |