Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA05G057890 |
|---|---|
| Query reference | TK1151 |
| Location | Chr05:15397867-15400327 (+) |
| Description | Similar to TIF3E1: Eukaryotic translation initiation factor 3 subunit E (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_019520 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g57290 |
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.596; coverage=97.955; evalue=1.4e-160; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001732 | formation of cytoplasmic translation initiation complex | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006352 | DNA-templated transcription initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006412 | translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006413 | translational initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006874 | intracellular calcium ion homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.596; coverage=97.955; evalue=1.48e-160; UniProt GO evidence=IMP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009640 | photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045727 | positive regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.596; coverage=97.955; evalue=1.48e-160; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090316 | positive regulation of intracellular protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.596; coverage=97.955; evalue=1.48e-160; UniProt GO evidence=IMP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005852 | eukaryotic translation initiation factor 3 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008180 | COP9 signalosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016282 | eukaryotic 43S preinitiation complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031597 | cytosolic proteasome complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033290 | eukaryotic 48S preinitiation complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071540 | eukaryotic translation initiation factor 3 complex, eIF3e | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003743 | translation initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030371 | translation repressor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044325 | transmembrane transporter binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.596; coverage=97.955; evalue=1.48e-160; UniProt GO evidence=IPI:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G57290 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.598; coverage=98.864; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:534165 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.596; coverage=97.955; evalue=1.4e-160 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | nve:5516169 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.196; coverage=98.409; evalue=6.99e-169 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100173055 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.596; coverage=97.955; evalue=1.48e-160 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:299872 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=53.596; coverage=97.955; evalue=1.48e-160 | UniProtKB/Swiss-Prot DAT 2026 current_release |