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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA05G016140
Query referenceTK1151
LocationChr05:4559822-4563287 (-)
DescriptionSimilar to ZIP4: TPR repeat-containing protein ZIP4 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_019069 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g48390 Required for meiotic chromosome segregation.
Zip4/Spo22 is required for class I CO formation but not for synapsis completion in Arabidopsis thaliana.2007 · DOI: 10.1371/journal.pgen.0030083
Homologous chromosome pairing is completed in crossover defective atzip4 mutant.2008 · DOI: 10.1016/j.bbrc.2008.03.036

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0890900 Required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis.
ZIP4 in homologous chromosome synapsis and crossover formation in rice meiosis.2012 · DOI: 10.1242/jcs.090993
UniProt: A2WXU2 Required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000712resolution of meiotic recombination intermediatesBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.27; coverage=101.497; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006311meiotic gene conversionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=20.939; coverage=59.251; evalue=4.09e-06; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007060male meiosis chromosome segregationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=20.939; coverage=59.251; evalue=4.09e-06; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007129homologous chromosome pairing at meiosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.238; coverage=101.925; evalue=0.0; UniProt GO evidence=IEA:EnsemblPlantsUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007130synaptonemal complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=20.939; coverage=59.251; evalue=4.09e-06; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007131reciprocal meiotic recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.238; coverage=101.925; evalue=0.0; UniProt GO evidence=IEA:EnsemblPlantsUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007140male meiotic nuclear divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.27; coverage=101.497; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007143female meiotic nuclear divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.27; coverage=101.497; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071139resolution of DNA recombination intermediatesBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.238; coverage=101.925; evalue=0.0; UniProt GO evidence=IEA:EnsemblPlantsUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090173regulation of synaptonemal complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.27; coverage=101.497; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000801central elementCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=20.939; coverage=59.251; evalue=4.09e-06; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.27; coverage=101.497; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005694chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.27; coverage=101.497; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.27; coverage=101.497; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G48390KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.27; coverage=101.497; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0890800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.133; coverage=101.925; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0890900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.133; coverage=101.925; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:56159KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=20.939; coverage=59.251; evalue=4.09e-06UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4324913KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.133; coverage=101.925; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release