Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`TkA04G489130`
Query reference	TK1151
Location	Chr04:123690855-123692687 (+)
Description	Similar to IM30: Membrane-associated 30 kDa protein%2C chloroplastic (Pisum sativum OX%3D3888)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038976 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 11 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58440`	Plays a role in vesicular protein sorting (By similarity).	No verified direct reference in this release
`At5g07120`	Plays a role in vesicular protein sorting.	Overexpression of Arabidopsis sorting nexin AtSNX2b inhibits endocytic trafficking to the vacuole.2008 · DOI: 10.1093/mp/ssn057
`At1g65260`	Required for plastid vesicle formation and thylakoid membrane biogenesis, but not for functional assembly of thylakoid protein complexes.	VIPP1, a nuclear gene of Arabidopsis thaliana essential for thylakoid membrane formation.2001 · DOI: 10.1073/pnas.061500998 Vipp1 is required for basic thylakoid membrane formation but not for the assembly of thylakoid protein complexes.2007 · DOI: 10.1016/j.plaphy.2007.01.005

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0895100`	Required for plastid vesicle formation and thylakoid membrane biogenesis, but not for functional assembly of thylakoid protein complexes.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0010027	thylakoid membrane organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.333; coverage=35.762; evalue=1.62e-23; UniProt GO evidence=IEA:TreeGrafter	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016050	vesicle organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009534	chloroplast thylakoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009535	chloroplast thylakoid membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.333; coverage=35.762; evalue=1.62e-23; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009706	chloroplast inner membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.333; coverage=35.762; evalue=1.62e-23; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009707	chloroplast outer membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.333; coverage=35.762; evalue=1.62e-23; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009941	chloroplast envelope	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042644	chloroplast nucleoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G65260	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0895100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.254; coverage=41.722; evalue=3.2e-22	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4324967	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.254; coverage=41.722; evalue=3.2e-22	UniProtKB/Swiss-Prot DAT 2026 current_release