Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA04G470340`
Query reference	TK1151
Location	Chr04:118795759-118803682 (+)
Description	Similar to MET1B: DNA (cytosine-5)-methyltransferase 1B (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038842 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 15 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g49160`	Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability.	No verified direct reference in this release
`At4g14140`	Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability.	No verified direct reference in this release
`At4g08990`	Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0182900`	Major CG methylase that methylates chromatin CpG residues and maintains DNA methylation.	The MET1b gene encoding a maintenance DNA methyltransferase is indispensable for normal development in rice.2014 · DOI: 10.1007/s11103-014-0178-9 Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality.2014 · DOI: 10.1073/pnas.1410761111
`Os03g0798300`	Probably methylates CpG residues and maintains DNA methylation.	Characterization of two rice DNA methyltransferase genes and RNAi-mediated reactivation of a silenced transgene in rice callus.2004 · DOI: 10.1007/s00425-003-1112-6 The MET1b gene encoding a maintenance DNA methyltransferase is indispensable for normal development in rice.2014 · DOI: 10.1007/s11103-014-0178-9

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006346	DNA methylation-dependent constitutive heterochromatin formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.087; coverage=98.282; evalue=0.0; UniProt GO evidence=IMP:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009294	DNA-mediated transformation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.726; coverage=95.865; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.168; coverage=99.3; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009910	negative regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.726; coverage=95.865; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010069	zygote asymmetric cytokinesis in embryo sac	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.726; coverage=95.865; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010229	inflorescence development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.726; coverage=95.865; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032259	methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.168; coverage=99.3; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0044027	negative regulation of gene expression via chromosomal CpG island methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.168; coverage=99.3; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071514	genomic imprinting	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.168; coverage=99.3; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0141044	epigenetic programming in the endosperm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.726; coverage=95.865; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.168; coverage=99.3; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.168; coverage=99.3; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003682	chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.168; coverage=99.3; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.168; coverage=99.3; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008168	methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.726; coverage=95.865; evalue=0.0; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G08990	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.44; coverage=97.646; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G14140	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.389; coverage=97.583; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G49160	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.726; coverage=95.865; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0798300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.087; coverage=98.282; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os07g0182900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.168; coverage=99.3; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4334435	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.087; coverage=98.282; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release