Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA04G344130 |
|---|---|
| Query reference | TK1151 |
| Location | Chr04:86992508-86994130 (-) |
| Description | Similar to UBC35: Ubiquitin-conjugating enzyme E2 35 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_001918 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 37 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g78870 |
Catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. | |
At1g16890 |
Catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000209 | protein polyubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000724 | double-strand break repair via homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000729 | DNA double-strand break processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.272; coverage=96.078; evalue=2.46e-88; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006301 | DNA damage tolerance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006513 | protein monoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010039 | response to iron ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010053 | root epidermal cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=TAS:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045739 | positive regulation of DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050852 | T cell receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070534 | protein K63-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140374 | antiviral innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902523 | positive regulation of protein K63-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902533 | positive regulation of intracellular signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904262 | negative regulation of TORC1 signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000781 | positive regulation of double-strand break repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000151 | ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001650 | fibrillar center | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=99.346; coverage=100.0; evalue=2.25e-110; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031371 | ubiquitin conjugating enzyme complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031372 | UBC13-MMS2 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031625 | ubiquitin protein ligase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043130 | ubiquitin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061631 | ubiquitin conjugating enzyme activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097027 | ubiquitin-protein transferase activator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G16890 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=99.346; coverage=100.0; evalue=2.25e-110 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G78870 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=99.346; coverage=100.0; evalue=1.45e-110 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:93765 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=80.272; coverage=96.078; evalue=2.46e-88 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100174607 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.272; coverage=96.078; evalue=2.46e-88 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:116725 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=80.952; coverage=96.078; evalue=1.07e-88 | UniProtKB/Swiss-Prot DAT 2026 current_release |