Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA04G174820 |
|---|---|
| Query reference | TK1151 |
| Location | Chr04:45258134-45270054 (-) |
| Description | Similar to NOP2B: 26S rRNA (cytosine-C(5))-methyltransferase NOP2B (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_035052 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 20 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g26600 |
Involved in ribosomal large subunit assembly (By similarity). | No verified direct reference in this release |
At5g55920 |
Involved in ribosomal large subunit assembly, required for normal progression of rRNA processing. |
Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves of Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03886.x
|
At5g57930 |
May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts. | No verified direct reference in this release |
At1g64810 |
Involved in the stable assembly of several 4Fe-4S cluster- containing complexes of chloroplasts. | |
At5g61930 |
May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000027 | ribosomal large subunit assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.384; coverage=68.75; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000470 | maturation of LSU-rRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.626; coverage=108.681; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.384; coverage=68.75; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008284 | positive regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.384; coverage=68.75; evalue=0.0; UniProt GO evidence=IDA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009965 | leaf morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.247; coverage=82.986; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010015 | root morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.247; coverage=82.986; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040018 | positive regulation of multicellular organism growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.968; coverage=71.007; evalue=1.09e-169; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042127 | regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.247; coverage=82.986; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042273 | ribosomal large subunit biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.384; coverage=68.75; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045727 | positive regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.968; coverage=71.007; evalue=1.09e-169; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.247; coverage=82.986; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070475 | rRNA base methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.626; coverage=108.681; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090069 | regulation of ribosome biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.247; coverage=82.986; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900035 | negative regulation of cellular response to heat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.968; coverage=71.007; evalue=1.09e-169; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905516 | positive regulation of fertilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.968; coverage=71.007; evalue=1.09e-169; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.626; coverage=108.681; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.384; coverage=68.75; evalue=0.0; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.626; coverage=108.681; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.626; coverage=108.681; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009383 | rRNA (cytosine-C5-)-methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.626; coverage=108.681; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G26600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.626; coverage=108.681; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G55920 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.247; coverage=82.986; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cel:CELE_W07E6.1 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.968; coverage=71.007; evalue=1.09e-169 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:4839 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.384; coverage=68.75; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |