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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA04G129610
Query referenceTK1151
LocationChr04:33725920-33728619 (+)
DescriptionSimilar to HDA19: Histone deacetylase 19 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035457 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 15 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g38130 Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4).
Functional analysis of a RPD3 histone deacetylase homologue in Arabidopsis thaliana.2000 · DOI: 10.1023/a:1006498413543
HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis.2005 · DOI: 10.1105/tpc.104.028514
Arabidopsis thaliana histone deacetylase 1 (AtHD1) is localized in euchromatic regions and demonstrates histone deacetylase activity in vitro.2006 · DOI: 10.1038/sj.cr.7310059
APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19.2012 · DOI: 10.1242/dev.085407
The Distinct Roles of Class I and II RPD3-Like Histone Deacetylases in Salinity Stress Response.2017 · DOI: 10.1104/pp.17.01332

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0583400 Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4).
Structure and expression of the rice class-I type histone deacetylase genes OsHDAC1-3: OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture.2003 · DOI: 10.1046/j.1365-313x.2003.01650.x
The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice.2009 · DOI: 10.1111/j.1365-313x.2009.03908.x
MODD Mediates Deactivation and Degradation of OsbZIP46 to Negatively Regulate ABA Signaling and Drought Resistance in Rice.2016 · DOI: 10.1105/tpc.16.00171
Os02g0215200 Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). No verified direct reference in this release
Os02g0214900 Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009294DNA-mediated transformationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009861jasmonic acid and ethylene-dependent systemic resistanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0040029epigenetic regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042742defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901001negative regulation of response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1902459positive regulation of stem cell population maintenanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000026regulation of multicellular organismal developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000118histone deacetylase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070822Sin3-type complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004407histone deacetylase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0141221histone deacetylase activity, hydrolytic mechanismMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G38130KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.595; coverage=98.788; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0214900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.885; coverage=91.313; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0215200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=76.327; coverage=91.313; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os06g0583400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.165; coverage=102.626; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4328720KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=76.327; coverage=91.313; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4341387KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.165; coverage=102.626; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release