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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA04G082290
Query referenceTK1151
LocationChr04:21559078-21569058 (-)
DescriptionSimilar to NSP2: Protein NODULATION SIGNALING PATHWAY 2 (Medicago truncatula OX%3D3880)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_036041 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 9 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g55580 Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. No verified direct reference in this release
At2g29060 Probable transcription factor involved in plant development. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0127800 Probable transcription factor that acts as a positive regulator of brassinosteroid (BR) signaling.
SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING Form a Complex to Integrate Auxin and Brassinosteroid Signaling in Rice.2017 · DOI: 10.1016/j.molp.2016.12.013
Os01g0646300 Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway.
Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice.2005 · DOI: 10.1111/j.1365-313x.2005.02562.x
Os06g0610300 Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth.
Control of tillering in rice.2003 · DOI: 10.1038/nature01518

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.224; coverage=39.293; evalue=2.6e-30; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.224; coverage=39.293; evalue=2.6e-30; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009610response to symbiotic fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.224; coverage=39.293; evalue=2.6e-30; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009877nodulationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.224; coverage=39.293; evalue=2.6e-30; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.224; coverage=39.293; evalue=2.6e-30; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.224; coverage=39.293; evalue=2.6e-30; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031965nuclear membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.224; coverage=39.293; evalue=2.6e-30; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.224; coverage=39.293; evalue=2.6e-30; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043565sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.224; coverage=39.293; evalue=2.6e-30; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G08250KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.515; coverage=37.859; evalue=7.46e-22UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmtr:11406790KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.224; coverage=39.293; evalue=2.6e-30UniProtKB/Swiss-Prot DAT 2026 current_release