Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA04G017650 |
|---|---|
| Query reference | TK1151 |
| Location | Chr04:4402226-4403850 (+) |
| Description | Similar to At5g14050: U3 small nucleolar RNA-associated protein 18 homolog (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_036918 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g14050 |
Involved in nucleolar processing of pre-18S ribosomal RNA. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000292 | RNA fragment catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.013; coverage=82.007; evalue=6.85e-55; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000447 | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.013; coverage=82.007; evalue=6.85e-55; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000472 | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.013; coverage=82.007; evalue=6.85e-55; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000480 | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.013; coverage=82.007; evalue=6.85e-55; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.735; coverage=91.522; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030490 | maturation of SSU-rRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.857; coverage=72.664; evalue=1.78e-79; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042274 | ribosomal small subunit biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.321; coverage=72.318; evalue=1.13e-79; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.735; coverage=91.522; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.321; coverage=72.318; evalue=1.13e-79; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.735; coverage=91.522; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030686 | 90S preribosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.013; coverage=82.007; evalue=6.85e-55; UniProt GO evidence=HDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031965 | nuclear membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.321; coverage=72.318; evalue=1.13e-79; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032040 | small-subunit processome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.735; coverage=91.522; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034388 | Pwp2p-containing subcomplex of 90S preribosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.735; coverage=91.522; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.735; coverage=91.522; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.857; coverage=72.664; evalue=1.78e-79; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G14050 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.735; coverage=91.522; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:51096 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.857; coverage=72.664; evalue=1.78e-79 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:217109 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.321; coverage=72.318; evalue=1.13e-79 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YJL069C | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.013; coverage=82.007; evalue=6.85e-55 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2540529 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.492; coverage=93.945; evalue=2.63e-80 | UniProtKB/Swiss-Prot DAT 2026 current_release |