Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA03G393880 |
|---|---|
| Query reference | TK1151 |
| Location | Chr03:97779978-97782324 (+) |
| Description | Similar to LSM8: Sm-like protein LSM8 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_019451 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g14080 |
Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. | |
At1g19120 |
Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000244 | spliceosomal tri-snRNP complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.638; coverage=95.918; evalue=5.98e-39; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000387 | spliceosomal snRNP assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.638; coverage=95.918; evalue=5.98e-39; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.755; coverage=100.0; evalue=5.75e-57; UniProt GO evidence=IMP:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016070 | RNA metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.755; coverage=100.0; evalue=5.75e-57; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.755; coverage=100.0; evalue=5.75e-57; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.638; coverage=95.918; evalue=5.98e-39; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005681 | spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.638; coverage=95.918; evalue=5.98e-39; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005688 | U6 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.755; coverage=100.0; evalue=5.75e-57; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046540 | U4/U6 x U5 tri-snRNP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.755; coverage=100.0; evalue=5.75e-57; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071005 | U2-type precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.638; coverage=95.918; evalue=5.98e-39; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071011 | precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.755; coverage=100.0; evalue=5.75e-57; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0120115 | Lsm2-8 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.638; coverage=95.918; evalue=5.98e-39; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.638; coverage=95.918; evalue=5.98e-39; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.755; coverage=100.0; evalue=5.75e-57; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017070 | U6 snRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.638; coverage=95.918; evalue=5.98e-39; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G65700 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=87.755; coverage=100.0; evalue=5.75e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:613630 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=60.638; coverage=95.918; evalue=5.98e-39 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:51691 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.638; coverage=95.918; evalue=5.98e-39 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:76522 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.638; coverage=95.918; evalue=5.98e-39 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100172134 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.638; coverage=95.918; evalue=5.98e-39 | UniProtKB/Swiss-Prot DAT 2026 current_release |