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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA03G387750
Query referenceTK1151
LocationChr03:95963259-95968525 (+)
DescriptionSimilar to RHD3: Protein ROOT HAIR DEFECTIVE 3 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_036790 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g13870 Probable GTP-binding protein involved in cell wall expansion.
Regulation of the cell expansion gene RHD3 during Arabidopsis development.2002 · DOI: 10.1104/pp.002675
The Arabidopsis RHD3 gene is required for cell wall biosynthesis and actin organization.2003 · DOI: 10.1007/s00425-003-1067-7
A GFP-based assay reveals a role for RHD3 in transport between the endoplasmic reticulum and Golgi apparatus.2004 · DOI: 10.1046/j.1365-313x.2003.01969.x
Loss-of-function mutations of ROOT HAIR DEFECTIVE3 suppress root waving, skewing, and epidermal cell file rotation in Arabidopsis.2005 · DOI: 10.1104/pp.105.059774
Growth and ultrastructure of Arabidopsis root hairs: the rhd3 mutation alters vacuole enlargement and tip growth.1997 · DOI: 10.1007/bf01007706
The ROOT HAIR DEFECTIVE3 gene encodes an evolutionarily conserved protein with GTP-binding motifs and is required for regulated cell enlargement in Arabidopsis.1997 · DOI: 10.1101/gad.11.6.799
At1g72960 Probable GTP-binding protein that may be involved in cell development. No verified direct reference in this release
At5g45160 Probable GTP-binding protein that may be involved in cell development. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0575000 Probable GTP-binding protein that may be involved in cell development. No verified direct reference in this release
Os12g0604600 Probable GTP-binding protein that may be involved in cell development. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006888endoplasmic reticulum to Golgi vesicle-mediated transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009832plant-type cell wall biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009932cell tip growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010053root epidermal cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016320endoplasmic reticulum membrane fusionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.11; coverage=98.833; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030036actin cytoskeleton organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000139Golgi membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000325plant-type vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.241; coverage=99.092; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.11; coverage=98.833; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005789endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.11; coverage=98.833; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003924GTPase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.11; coverage=98.833; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005525GTP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.11; coverage=98.833; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G72960KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.241; coverage=99.092; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G13870KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.661; coverage=99.611; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G45160KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.729; coverage=98.184; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0575000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.11; coverage=98.833; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os12g0604600KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.005; coverage=98.314; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release