Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA03G074980 |
|---|---|
| Query reference | TK1151 |
| Location | Chr03:19236596-19238185 (+) |
| Description | Similar to PIF3: Transcription factor PIF3 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_001236 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 32 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g36930 |
Transcription factor that plays a role in floral organogenesis. | No verified direct reference in this release |
At5g67110 |
Required for the dehiscence of fruit, especially for the separation of the valve cells from the replum. | No verified direct reference in this release |
At1g09530 |
Transcription factor acting in the phytochrome signaling pathway. |
PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings.2013 · DOI: 10.1105/tpc.113.109710 Coordinated Regulation of Hypocotyl Cell Elongation by Light and Ethylene through a Microtubule Destabilizing Protein.2018 · DOI: 10.1104/pp.17.01109
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0286100 |
Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. | |
Os05g0139100 |
Atypical bHLH transcription factor that acts as a negative regulator of grain size. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007165 | signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=TAS:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009408 | response to heat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009409 | response to cold | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009585 | red, far-red light phototransduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009639 | response to red or far red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009641 | shade avoidance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.676; coverage=36.164; evalue=1.81e-36; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009704 | de-etiolation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009723 | response to ethylene | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009733 | response to auxin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009740 | gibberellic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009742 | brassinosteroid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.698; coverage=18.448; evalue=7.89e-36; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009826 | unidimensional cell growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010017 | red or far-red light signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031539 | positive regulation of anthocyanin metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042548 | regulation of photosynthesis, light reaction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.841; coverage=34.993; evalue=4.42e-36; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080006 | internode patterning | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.841; coverage=34.993; evalue=4.42e-36; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080113 | regulation of seed growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.698; coverage=18.448; evalue=7.89e-36; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090229 | negative regulation of red or far-red light signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.455; coverage=73.939; evalue=6.3e-52; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902074 | response to salt | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905421 | regulation of plant organ morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990785 | response to water-immersion restraint stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046983 | protein dimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G09530 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G46970 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.676; coverage=36.164; evalue=1.81e-36 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0286100 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.455; coverage=73.939; evalue=6.3e-52 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0782500 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.841; coverage=34.993; evalue=4.42e-36 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os05g0139100 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.698; coverage=18.448; evalue=7.89e-36 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4327916 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.455; coverage=73.939; evalue=6.3e-52 | UniProtKB/Swiss-Prot DAT 2026 current_release |