Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA02G413380`
Query reference	TK1151
Location	Chr02:105135095-105137164 (-)
Description	Similar to FAMA: Transcription factor FAMA (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_014554 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g24140`	Transcription activator.	Arabidopsis FAMA controls the final proliferation/differentiation switch during stomatal development.2006 · DOI: 10.1105/tpc.106.046136 Termination of asymmetric cell division and differentiation of stomata.2007 · DOI: 10.1038/nature05467 Deep functional redundancy between FAMA and FOUR LIPS in stomatal development.2014 · DOI: 10.1111/tpj.12489 Arabidopsis guard cell integrity involves the epigenetic stabilization of the FLP and FAMA transcription factor genes.2014 · DOI: 10.1111/tpj.12516
`At1g22490`	Transcription factor bHLH94.	No verified direct reference in this release
`At3g06120`	Transcription factor.	Termination of asymmetric cell division and differentiation of stomata.2007 · DOI: 10.1038/nature05467
`At5g53210`	Transcription factor acting as an integration node for stomata and brassinosteroid (BR) signaling pathways to control stomatal initiation and development.	Transcription factor control of asymmetric cell divisions that establish the stomatal lineage.2007 · DOI: 10.1038/nature05491 Termination of asymmetric cell division and differentiation of stomata.2007 · DOI: 10.1038/nature05467 SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation.2008 · DOI: 10.1105/tpc.108.060848 SPEECHLESS integrates brassinosteroid and stomata signalling pathways.2012 · DOI: 10.1038/ncb2471 Phosphorylation of Serine 186 of bHLH Transcription Factor SPEECHLESS Promotes Stomatal Development in Arabidopsis.2015 · DOI: 10.1016/j.molp.2014.12.014 The BASL polarity protein controls a MAPK signaling feedback loop in asymmetric cell division.2015 · DOI: 10.1016/j.devcel.2015.02.022 A Mutation in the bHLH Domain of the SPCH Transcription Factor Uncovers a BR-Dependent Mechanism for Stomatal Development.2017 · DOI: 10.1104/pp.17.00615
`At1g72210`	Transcription factor bHLH96.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.335; coverage=48.798; evalue=1.24e-45; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.335; coverage=48.798; evalue=1.24e-45; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010052	guard cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010374	stomatal complex development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010377	guard cell fate commitment	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IGI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010444	guard mother cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045597	positive regulation of cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051782	negative regulation of cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090547	response to low humidity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090627	plant epidermal cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.615; coverage=46.875; evalue=3.16e-46; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.723; coverage=51.202; evalue=1.45e-41; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.615; coverage=46.875; evalue=3.16e-46; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.335; coverage=48.798; evalue=1.24e-45; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.335; coverage=48.798; evalue=1.24e-45; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G22490	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.335; coverage=48.798; evalue=1.24e-45	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G72210	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.439; coverage=49.279; evalue=9.85e-44	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G06120	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.615; coverage=46.875; evalue=3.16e-46	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G24140	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.863; coverage=98.077; evalue=1.15e-138	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G01460	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.723; coverage=51.202; evalue=1.45e-41	UniProtKB/Swiss-Prot DAT 2026 current_release