Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA02G366180`
Query reference	TK1151
Location	Chr02:93159186-93173868 (-)
Description	Similar to XRN3: 5'-3' exoribonuclease 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_015118 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75660`	Possesses 5'->3' exoribonuclease activity.	Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors.2007 · DOI: 10.1105/tpc.107.055319 Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA.2010 · DOI: 10.1093/nar/gkq172
`UniProt: Q9FQ02`	Possesses 5'->3' exoribonuclease activity.	No verified direct reference in this release
`At1g54490`	Possesses 5'->3' exoribonuclease activity.	AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets.2004 · DOI: 10.1016/j.molcel.2004.06.006 A link between mRNA turnover and RNA interference in Arabidopsis.2004 · DOI: 10.1126/science.1101092 ETHYLENE-INSENSITIVE5 encodes a 5'-->3' exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2.2006 · DOI: 10.1073/pnas.0605528103 The exoribonuclease XRN4 is a component of the ethylene response pathway in Arabidopsis.2006 · DOI: 10.1105/tpc.106.046508

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000956	nuclear-transcribed mRNA catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000967	rRNA 5'-end processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006353	DNA-templated transcription termination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.733; coverage=66.494; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006364	rRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.733; coverage=66.494; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006369	termination of RNA polymerase II transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.116; coverage=59.852; evalue=0.0; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006397	mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007283	spermatogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.116; coverage=59.852; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010587	miRNA catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040034	regulation of development, heterochronic	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.596; coverage=59.926; evalue=0.0; UniProt GO evidence=IGI:WormBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051984	positive regulation of chromosome segregation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.733; coverage=66.494; evalue=0.0; UniProt GO evidence=IEA:EnsemblFungi	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0060149	negative regulation of post-transcriptional gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0060965	negative regulation of miRNA-mediated gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.596; coverage=59.926; evalue=0.0; UniProt GO evidence=EXP:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0180037	rapid tRNA decay	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.733; coverage=66.494; evalue=0.0; UniProt GO evidence=IEA:EnsemblFungi	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.116; coverage=59.852; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.116; coverage=59.852; evalue=0.0; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001147	transcription termination site sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.116; coverage=59.852; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004534	5'-3' RNA exonuclease activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008409	5'-3' exonuclease activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.116; coverage=59.852; evalue=0.0; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.116; coverage=59.852; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G75660	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.631; coverage=66.347; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G42540	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.161; coverage=66.125; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	cel:CELE_Y48B6A.3	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.596; coverage=59.926; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	gga:421236	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.116; coverage=59.852; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ncr:NCU01643	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.733; coverage=66.494; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release