Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA02G192680`
Query reference	TK1151
Location	Chr02:49401367-49404005 (+)
Description	Similar to CSN6A: COP9 signalosome complex subunit 6a (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_016103 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 13 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g56280`	Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses.	Molecular characterization of subunit 6 of the COP9 signalosome and its role in multifaceted developmental processes in Arabidopsis.2001 · DOI: 10.1105/tpc.010248 Role of the MPN subunits in COP9 signalosome assembly and activity, and their regulatory interaction with Arabidopsis Cullin3-based E3 ligases.2007 · DOI: 10.1105/tpc.106.047571
`At4g26430`	Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses.	Role of the MPN subunits in COP9 signalosome assembly and activity, and their regulatory interaction with Arabidopsis Cullin3-based E3 ligases.2007 · DOI: 10.1105/tpc.106.047571

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0500000`	Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and response to hormones (Probable).	CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.2016 · DOI: 10.1038/srep25485

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000338	protein deneddylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009585	red, far-red light phototransduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009640	photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010387	COP9 signalosome assembly	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030163	protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990641	response to iron ion starvation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=77.67; coverage=98.095; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005576	extracellular region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=78.344; coverage=99.683; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008180	COP9 signalosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045335	phagocytic vesicle	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.013; coverage=98.095; evalue=8.96e-84; UniProt GO evidence=HDA:dictyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008237	metallopeptidase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G26430	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=78.344; coverage=99.683; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G56280	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.892; coverage=99.683; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ddi:DDB_G0293180	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.013; coverage=98.095; evalue=8.96e-84	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os08g0500000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=77.67; coverage=98.095; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4345944	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=77.67; coverage=98.095; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	xla:414575	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.777; coverage=98.095; evalue=2.18e-78	UniProtKB/Swiss-Prot DAT 2026 current_release