Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA02G108620 |
|---|---|
| Query reference | TK1151 |
| Location | Chr02:28350902-28354648 (-) |
| Description | Similar to AMSH3: AMSH-like ubiquitin thioesterase 3 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_016726 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 33 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g16144 |
Zinc metalloprotease that cleaves 'Lys-48'- and 'Lys-63'- linked polyubiquitin chains, but is not implicated in protein degradation by the 26S proteasome, deneddylation, or desumoylation. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000281 | mitotic cytokinesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006897 | endocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007033 | vacuole organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007259 | cell surface receptor signaling pathway via JAK-STAT | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008284 | positive regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015031 | protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016579 | protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032511 | late endosome to vacuole transport via multivesicular body sorting pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044090 | positive regulation of vacuole organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046580 | negative regulation of Ras protein signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051898 | negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070536 | protein K63-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071108 | protein K48-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090316 | positive regulation of intracellular protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.646; coverage=28.733; evalue=2.9e-15; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005768 | endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005769 | early endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005770 | late endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005774 | vacuolar membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.82; coverage=40.271; evalue=2.24e-25; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032154 | cleavage furrow | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070062 | extracellular exosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019904 | protein domain specific binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061578 | K63-linked deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0101005 | deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140492 | metal-dependent deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.069; coverage=52.715; evalue=1.1e-48; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G10600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.646; coverage=28.733; evalue=2.9e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G48790 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.82; coverage=40.271; evalue=2.24e-25 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:797422 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.801; coverage=34.163; evalue=1.23e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:10617 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.282; coverage=40.95; evalue=1.63e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release |