RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDTkA02G075560
Query referenceTK1151
LocationChr02:19559124-19562988 (-)
DescriptionSimilar to SPO11-1: Meiotic recombination protein SPO11-1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022855 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 22 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g13170 DNA endonuclease, which specifically mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination.
AtSPO11-1 is necessary for efficient meiotic recombination in plants.2001 · DOI: 10.1093/emboj/20.3.589
Arabidopsis SPO11-2 functions with SPO11-1 in meiotic recombination.2006 · DOI: 10.1111/j.1365-313x.2006.02867.x
The catalytically active tyrosine residues of both SPO11-1 and SPO11-2 are required for meiotic double-strand break induction in Arabidopsis.2007 · DOI: 10.1105/tpc.107.054817
A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana.2009 · DOI: 10.1371/journal.pgen.1000654
A DNA topoisomerase VI-like complex initiates meiotic recombination.2016 · DOI: 10.1126/science.aad5196
At5g02820 Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles.
A crucial role for the putative Arabidopsis topoisomerase VI in plant growth and development.2002 · DOI: 10.1073/pnas.152337599
DNA topoisomerase VI is essential for endoreduplication in Arabidopsis.2002 · DOI: 10.1016/s0960-9822(02)01198-3

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q5ZPV8 DNA endonuclease, which specifically mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination. No verified direct reference in this release
Os03g0752200 DNA endonuclease, which specifically mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination.
OsSPO11-1 is essential for both homologous chromosome pairing and crossover formation in rice.2010 · DOI: 10.1007/s00412-010-0284-7

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000706meiotic DNA double-strand break processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000724double-strand break repair via homologous recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IEA:EnsemblPlantsUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007129homologous chromosome pairing at meiosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007130synaptonemal complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.028; coverage=77.174; evalue=1.18e-73; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007131reciprocal meiotic recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007141male meiosis IBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.028; coverage=77.174; evalue=1.18e-73; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007283spermatogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.211; coverage=96.467; evalue=5.87e-76; UniProt GO evidence=TAS:ProtIncUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007286spermatid developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.028; coverage=77.174; evalue=1.18e-73; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007292female gamete generationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.211; coverage=96.467; evalue=5.87e-76; UniProt GO evidence=TAS:ProtIncUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034502protein localization to chromosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.028; coverage=77.174; evalue=1.18e-73; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042138meiotic DNA double-strand break formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045141meiotic telomere clusteringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.028; coverage=77.174; evalue=1.18e-73; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051026chiasma assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990918double-strand break repair involved in meiotic recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.028; coverage=77.174; evalue=1.18e-73; UniProt GO evidence=IGI:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000228nuclear chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000781chromosome, telomeric regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.211; coverage=96.467; evalue=5.87e-76; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.028; coverage=77.174; evalue=1.18e-73; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003918DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G13170KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.606; coverage=96.467; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0752200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.464; coverage=94.837; evalue=1.37e-144UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:23626KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.211; coverage=96.467; evalue=5.87e-76UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:26972KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.028; coverage=77.174; evalue=1.18e-73UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:9267055KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.464; coverage=94.837; evalue=1.37e-144UniProtKB/Swiss-Prot DAT 2026 current_release