Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA01G611100 |
|---|---|
| Query reference | TK1151 |
| Location | Chr01:154075851-154078744 (+) |
| Description | Similar to SNX1: Sorting nexin 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_000451 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 38 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g06140 |
Plays a role in vesicular protein sorting. |
AtSNX1 defines an endosome for auxin-carrier trafficking in Arabidopsis.2006 · DOI: 10.1038/nature05046 Evidence for a sorting endosome in Arabidopsis root cells.2008 · DOI: 10.1111/j.1365-313x.2007.03338.x Differential degradation of PIN2 auxin efflux carrier by retromer-dependent vacuolar targeting.2008 · DOI: 10.1073/pnas.0808073105
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006623 | protein targeting to vacuole | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006886 | intracellular protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006896 | Golgi to vacuole transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008333 | endosome to lysosome transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009958 | positive gravitropism | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031623 | receptor internalization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034498 | early endosome to Golgi transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042147 | retrograde transport, endosome to Golgi | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045732 | positive regulation of protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048364 | root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072659 | protein localization to plasma membrane | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072673 | lamellipodium morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097750 | endosome membrane tubulation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35; UniProt GO evidence=IDA:HGNC-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005764 | lysosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005768 | endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005771 | multivesicular body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=IEA:GOC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010008 | endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030027 | lamellipodium | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030904 | retromer complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030905 | retromer, tubulation complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031901 | early endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031982 | vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005154 | epidermal growth factor receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005158 | insulin receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035091 | phosphatidylinositol binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35; UniProt GO evidence=IPI:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045296 | cadherin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35; UniProt GO evidence=HDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046982 | protein heterodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35; UniProt GO evidence=IPI:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990459 | transferrin receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990460 | leptin receptor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G06140 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.436; coverage=97.015; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:512029 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.546; coverage=96.517; evalue=7.75e-36 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:6642 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.546; coverage=96.517; evalue=1.06e-35 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:67804 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.598; coverage=97.264; evalue=1.35e-35 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100174193 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.804; coverage=96.517; evalue=7.23e-36 | UniProtKB/Swiss-Prot DAT 2026 current_release |