Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA01G539740`
Query reference	TK1151
Location	Chr01:135353061-135355802 (+)
Description	Similar to LNK2: Protein LNK2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_034332 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 8 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64170`	Transcriptional coactivator necessary for expression of the clock genes PRR5 and TOC1.	LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator.2013 · DOI: 10.1073/pnas.1302170110 LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator.2014 · DOI: 10.1105/tpc.114.126573 LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.2015 · DOI: 10.1080/15592324.2015.1010888
`At3g54500`	Transcriptional coactivator necessary for expression of the clock genes PRR5 and TOC1.	LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator.2013 · DOI: 10.1073/pnas.1302170110 LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator.2014 · DOI: 10.1105/tpc.114.126573 LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.2015 · DOI: 10.1080/15592324.2015.1010888

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.019; coverage=52.393; evalue=3.79e-23; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006354	DNA-templated transcription elongation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.977; coverage=21.914; evalue=4.23e-13; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.019; coverage=52.393; evalue=3.79e-23; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009649	entrainment of circadian clock	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.019; coverage=52.393; evalue=3.79e-23; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032922	circadian regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.019; coverage=52.393; evalue=3.79e-23; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.019; coverage=52.393; evalue=3.79e-23; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003712	transcription coregulator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.019; coverage=52.393; evalue=3.79e-23; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070063	RNA polymerase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.977; coverage=21.914; evalue=4.23e-13; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G54500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.019; coverage=52.393; evalue=3.79e-23	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G64170	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.977; coverage=21.914; evalue=4.23e-13	UniProtKB/Swiss-Prot DAT 2026 current_release