Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA01G499770`
Query reference	TK1151
Location	Chr01:125209541-125212408 (+)
Description	Similar to SPS2: Solanesyl diphosphate synthase 2%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001903 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17050`	Involved in providing solanesyl diphosphate for plastoquinone-9 (PQ-9) formation in plastids (Probable).	Functional modeling identifies paralogous solanesyl-diphosphate synthases that assemble the side chain of plastoquinone-9 in plastids.2013 · DOI: 10.1074/jbc.m113.492769
`At1g78510`	Involved in providing solanesyl diphosphate for plastoquinone-9 (PQ-9) formation in plastids.	Functional modeling identifies paralogous solanesyl-diphosphate synthases that assemble the side chain of plastoquinone-9 in plastids.2013 · DOI: 10.1074/jbc.m113.492769

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0271700`	Involved in providing solanesyl diphosphate for plastoquinone-9 (PQ-9) formation.	No verified direct reference in this release
`Os05g0582300`	Involved in providing solanesyl diphosphate for plastoquinone-9 (PQ-9) formation.	Two solanesyl diphosphate synthases with different subcellular localizations and their respective physiological roles in Oryza sativa.2010 · DOI: 10.1093/jxb/erq103

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0008299	isoprenoid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.458; coverage=101.182; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010236	plastoquinone biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.458; coverage=101.182; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015979	photosynthesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.276; coverage=76.359; evalue=3.35e-123; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.29; coverage=101.182; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.458; coverage=101.182; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.458; coverage=101.182; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.458; coverage=101.182; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004311	geranylgeranyl diphosphate synthase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.29; coverage=101.182; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004337	(2E,6E)-farnesyl diphosphate synthase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.866; coverage=84.87; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004659	prenyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.458; coverage=101.182; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.458; coverage=101.182; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0052923	all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.0; coverage=89.835; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0052924	all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.458; coverage=101.182; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G17050	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.458; coverage=101.182; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G78510	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.29; coverage=101.182; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os12g0271700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.0; coverage=89.835; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4351957	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.0; coverage=89.835; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	syn:slr0611	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.276; coverage=76.359; evalue=3.35e-123	UniProtKB/Swiss-Prot DAT 2026 current_release