Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA01G393460 |
|---|---|
| Query reference | TK1151 |
| Location | Chr01:98152265-98162920 (-) |
| Description | Similar to SGS3: Protein SUPPRESSOR OF GENE SILENCING 3 (Solanum lycopersicum OX%3D4081) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_003101 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 26 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g23570 |
Required for post-transcriptional gene silencing and natural virus resistance. |
Geminivirus VIGS of endogenous genes requires SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants.2004 · DOI: 10.1111/j.1365-313x.2004.02103.x
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os12g0197500 |
Required for post-transcriptional gene silencing and natural virus resistance. | No verified direct reference in this release |
UniProt: A2ZIW7 |
Required for post-transcriptional gene silencing and natural virus resistance. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009408 | response to heat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009616 | RNAi-mediated antiviral immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010025 | wax biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010050 | vegetative phase change | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010267 | ta-siRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010286 | heat acclimation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030422 | siRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031047 | regulatory ncRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.601; coverage=86.235; evalue=6.03e-159; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035278 | miRNA-mediated gene silencing by inhibition of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042742 | defense response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050688 | regulation of defense response to virus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.601; coverage=86.235; evalue=6.03e-159; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051607 | defense response to virus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.601; coverage=86.235; evalue=6.03e-159; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070921 | regulation of siRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900248 | negative regulation of cytoplasmic translational elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000028 | regulation of photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010494 | cytoplasmic stress granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036464 | cytoplasmic ribonucleoprotein granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048471 | perinuclear region of cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.601; coverage=86.235; evalue=6.03e-159; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003725 | double-stranded RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031625 | ubiquitin protein ligase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045182 | translation regulator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140693 | molecular condensate scaffold activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905172 | RISC complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154; UniProt GO evidence=IDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G23570 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.588; coverage=83.536; evalue=1.01e-154 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os12g0197500 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.005; coverage=78.138; evalue=1.62e-124 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sly:100134882 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.601; coverage=86.235; evalue=6.03e-159 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | zma:100037819 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.664; coverage=78.812; evalue=6.34e-133 | UniProtKB/Swiss-Prot DAT 2026 current_release |