Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA01G120600`
Query reference	TK1151
Location	Chr01:30557806-30559536 (+)
Description	Similar to Polygalacturonase (Prunus persica OX%3D3760)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_004707 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 15 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g43860`	Probable polygalacturonase At2g43860.	No verified direct reference in this release
`At3g07970`	Polygalacturonase required for cell type-specific pectin degradation to separate microspores.	ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are Polygalacturonases required for cell separation during reproductive development in Arabidopsis.2009 · DOI: 10.1105/tpc.108.063768 Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes.1994 · DOI: 10.1126/science.8197459
`At2g41850`	Polygalacturonase involved in cell separation in the final stages of pod shatter, in anther dehiscence and in floral organ abscission.	Expression of polygalacturonases and evidence to support their role during cell separation processes in Arabidopsis thaliana.2007 · DOI: 10.1093/jxb/erm222 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are Polygalacturonases required for cell separation during reproductive development in Arabidopsis.2009 · DOI: 10.1105/tpc.108.063768

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0005975	carbohydrate metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.496; coverage=99.235; evalue=3.12e-176; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009555	pollen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.818; coverage=91.071; evalue=3.02e-96; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009835	fruit ripening	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.496; coverage=99.235; evalue=3.12e-176; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009846	pollen germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.818; coverage=91.071; evalue=3.02e-96; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045490	pectin catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.818; coverage=91.071; evalue=3.02e-96; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048868	pollen tube development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.818; coverage=91.071; evalue=3.02e-96; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071555	cell wall organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.496; coverage=99.235; evalue=3.12e-176; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005576	extracellular region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.496; coverage=99.235; evalue=3.12e-176; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.818; coverage=91.071; evalue=3.02e-96; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.818; coverage=91.071; evalue=3.02e-96; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031982	vesicle	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.818; coverage=91.071; evalue=3.02e-96; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043667	pollen wall	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.818; coverage=91.071; evalue=3.02e-96; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004650	polygalacturonase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.496; coverage=99.235; evalue=3.12e-176; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019863	IgE binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.818; coverage=91.071; evalue=3.02e-96; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0047911	galacturan 1,4-alpha-galacturonidase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.818; coverage=91.071; evalue=3.02e-96; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G43860	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.014; coverage=94.133; evalue=4.16e-135	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ghi:107942091	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.806; coverage=101.276; evalue=2.79e-91	UniProtKB/Swiss-Prot DAT 2026 current_release