Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA01G095000 |
|---|---|
| Query reference | TK1151 |
| Location | Chr01:24011512-24013356 (-) |
| Description | Similar to TOP6A: DNA topoisomerase 6 subunit A (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_004941 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 25 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g02820 |
Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. | |
At3g13170 |
DNA endonuclease, which specifically mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination. |
AtSPO11-1 is necessary for efficient meiotic recombination in plants.2001 · DOI: 10.1093/emboj/20.3.589 Arabidopsis SPO11-2 functions with SPO11-1 in meiotic recombination.2006 · DOI: 10.1111/j.1365-313x.2006.02867.x The catalytically active tyrosine residues of both SPO11-1 and SPO11-2 are required for meiotic double-strand break induction in Arabidopsis.2007 · DOI: 10.1105/tpc.107.054817
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
UniProt: A2XFC1 |
Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. | No verified direct reference in this release |
Os03g0284800 |
Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000706 | meiotic DNA double-strand break processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006265 | DNA topological change | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007129 | homologous chromosome pairing at meiosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.11; coverage=83.848; evalue=6.91e-79; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007130 | synaptonemal complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.11; coverage=83.848; evalue=6.91e-79; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007131 | reciprocal meiotic recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007141 | male meiosis I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.11; coverage=83.848; evalue=6.91e-79; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.006; coverage=84.086; evalue=9.29e-81; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007286 | spermatid development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.11; coverage=83.848; evalue=6.91e-79; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007292 | female gamete generation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.006; coverage=84.086; evalue=9.29e-81; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034502 | protein localization to chromosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.11; coverage=83.848; evalue=6.91e-79; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042138 | meiotic DNA double-strand break formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045141 | meiotic telomere clustering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.11; coverage=83.848; evalue=6.91e-79; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090628 | plant epidermal cell fate specification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990918 | double-strand break repair involved in meiotic recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.11; coverage=83.848; evalue=6.91e-79; UniProt GO evidence=IGI:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000228 | nuclear chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000781 | chromosome, telomeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.006; coverage=84.086; evalue=9.29e-81; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.11; coverage=83.848; evalue=6.91e-79; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009330 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000287 | magnesium ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.006; coverage=84.086; evalue=9.29e-81; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G02820 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=84.3; coverage=98.337; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0284800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.014; coverage=101.188; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:23626 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.006; coverage=84.086; evalue=9.29e-81 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:26972 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.11; coverage=83.848; evalue=6.91e-79 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4332468 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.014; coverage=101.188; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |