Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA01G090340 |
|---|---|
| Query reference | TK1151 |
| Location | Chr01:22940919-22944778 (-) |
| Description | Similar to PAB7: Polyadenylate-binding protein 7 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_032594 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 35 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g36660 |
Binds the poly(A) tail of mRNA. | No verified direct reference in this release |
At4g34110 |
Binds the poly(A) tail of mRNA. | No verified direct reference in this release |
At1g22760 |
Binds the poly(A) tail of mRNA. | |
At1g49760 |
Binds the poly(A) tail of mRNA. | No verified direct reference in this release |
At2g23350 |
Binds the poly(A) tail of mRNA. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168; UniProt GO evidence=IC:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006417 | regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.115; coverage=97.214; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031047 | regulatory ncRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045070 | positive regulation of viral genome replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048255 | mRNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060213 | positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070934 | CRD-mediated mRNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900152 | negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900153 | positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000623 | negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000767 | positive regulation of cytoplasmic translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.115; coverage=97.214; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.115; coverage=97.214; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005925 | focal adhesion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.115; coverage=97.214; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010494 | cytoplasmic stress granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030027 | lamellipodium | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031252 | cell leading edge | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036464 | cytoplasmic ribonucleoprotein granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070062 | extracellular exosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071013 | catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106002 | mCRD-mediated mRNA stability complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.115; coverage=97.214; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003730 | mRNA 3'-UTR binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.115; coverage=97.214; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008143 | poly(A) binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.115; coverage=97.214; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008266 | poly(U) RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.115; coverage=97.214; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008494 | translation activator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G36660 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.115; coverage=97.214; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:282296 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.93; coverage=99.226; evalue=1.04e-168 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:26986 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.93; coverage=99.226; evalue=1.04e-168 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:18458 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.93; coverage=99.226; evalue=2.38e-169 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:171350 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.898; coverage=98.607; evalue=3.41e-168 | UniProtKB/Swiss-Prot DAT 2026 current_release |