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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA01G003020
Query referenceTK1151
LocationChr01:778317-780327 (+)
DescriptionSimilar to PME68: Probable pectinesterase 68 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005986 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 11 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g47500 Acts in the modification of cell walls via demethylesterification of cell wall pectin. No verified direct reference in this release
At5g19730 Acts in the modification of cell walls via demethylesterification of cell wall pectin. No verified direct reference in this release
At5g55590 Pectinesterase required for cell type-specific pectin degradation to separate microspores.
Separation of Arabidopsis pollen tetrads is regulated by QUARTET1, a pectin methylesterase gene.2006 · DOI: 10.1104/pp.106.085274
Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes.1994 · DOI: 10.1126/science.8197459
Tetrad pollen formation in quartet mutants of Arabidopsis thaliana is associated with persistence of pectic polysaccharides of the pollen mother cell wall.1998 · DOI: 10.1046/j.1365-313x.1998.00183.x
At2g36710 Acts in the modification of cell walls via demethylesterification of cell wall pectin. No verified direct reference in this release
At1g05310 Acts in the modification of cell walls via demethylesterification of cell wall pectin. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009408response to heatBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.097; coverage=85.251; evalue=1.02e-96; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.097; coverage=85.251; evalue=1.02e-96; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010588cotyledon vascular tissue pattern formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.097; coverage=85.251; evalue=1.02e-96; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042545cell wall modificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.148; coverage=99.705; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045490pectin catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.148; coverage=99.705; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005576extracellular regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.148; coverage=99.705; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.097; coverage=85.251; evalue=1.02e-96; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009505plant-type cell wallCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.097; coverage=85.251; evalue=1.02e-96; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.097; coverage=85.251; evalue=1.02e-96; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048046apoplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.097; coverage=85.251; evalue=1.02e-96; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030599pectinesterase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.148; coverage=99.705; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G05310KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=45.161; coverage=91.445; evalue=2.77e-89UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G36710KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.351; coverage=89.086; evalue=5.32e-93UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G19730KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.097; coverage=85.251; evalue=1.02e-96UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G47500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.148; coverage=99.705; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G55590KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.675; coverage=89.086; evalue=8.8e-91UniProtKB/Swiss-Prot DAT 2026 current_release