Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_039113 |
|---|---|
| Query reference | OH1004 |
| Location | Chr09:59481771-59482834 (+) |
| Description | Similar to ATL54: RING-H2 finger protein ATL54 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_039113 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g72220 |
RING-H2 finger protein ATL54. | No verified direct reference in this release |
At5g17600 |
RING-H2 finger protein ATL52. | No verified direct reference in this release |
At3g03550 |
RING-H2 finger protein ATL51. | No verified direct reference in this release |
At5g10380 |
E3 ubiquitin-protein ligase that may be involved in positive regulation of programmed cell death (PCD) by facilitating degradation of negative regulators of PCD. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0590900 |
Possesses E3 ubiquitin-protein ligase in vitro. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0002238 | response to molecule of fungal origin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=34.971; evalue=1.73e-35; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006952 | defense response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=34.971; evalue=1.73e-35; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009617 | response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=34.971; evalue=1.73e-35; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0012501 | programmed cell death | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=34.971; evalue=1.73e-35; UniProt GO evidence=IC:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.333; coverage=65.029; evalue=7.7e-44; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043068 | positive regulation of programmed cell death | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=34.971; evalue=1.73e-35; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051865 | protein autoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=34.971; evalue=1.73e-35; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.105; coverage=43.931; evalue=1.38e-35; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=34.971; evalue=1.73e-35; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=34.971; evalue=1.73e-35; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.75; coverage=69.364; evalue=1.15e-38; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.333; coverage=65.029; evalue=7.7e-44; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=34.971; evalue=1.73e-35; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.333; coverage=65.029; evalue=7.7e-44; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.333; coverage=65.029; evalue=7.7e-44; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G72220 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.333; coverage=65.029; evalue=7.7e-44 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G03550 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.105; coverage=43.931; evalue=1.38e-35 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G10380 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.545; coverage=34.971; evalue=1.73e-35 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G17600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.75; coverage=69.364; evalue=1.15e-38 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os04g0590900 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.772; coverage=45.665; evalue=6.43e-34 | UniProtKB/Swiss-Prot DAT 2026 current_release |