Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_038720 |
|---|---|
| Query reference | OH1004 |
| Location | Chr09:48844949-48845833 (-) |
| Description | Similar to PYM: Partner of Y14 and mago (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_038720 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g11400 |
Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmark for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006417 | regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010628 | positive regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045727 | positive regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.168; coverage=93.953; evalue=1.25e-16; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051028 | mRNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903259 | exon-exon junction complex disassembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.615; coverage=84.651; evalue=1.95e-15; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030054 | cell junction | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.615; coverage=84.651; evalue=1.95e-15; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035145 | exon-exon junction complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043022 | ribosome binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.168; coverage=93.953; evalue=1.25e-16; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G11400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.0; coverage=93.023; evalue=4.89e-61 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bmor:692986 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.414; coverage=88.837; evalue=3.87e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:393566 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.168; coverage=93.953; evalue=1.25e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:78428 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.615; coverage=84.651; evalue=1.95e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sasa:106572489 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.673; coverage=93.953; evalue=2.85e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release |