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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_038351
Query referenceOH1004
LocationChr09:38327204-38329166 (-)
DescriptionSimilar to RTL2: Ribonuclease 3-like protein 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038351 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 8 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g20420 Ribonuclease that cleaves double-stranded RNA (dsRNA).
Characterization of a ribonuclease III-like protein required for cleavage of the pre-rRNA in the 3'ETS in Arabidopsis.2008 · DOI: 10.1093/nar/gkm1130
An Arabidopsis RNase III-like protein, AtRTL2, cleaves double-stranded RNA in vitro.2011 · DOI: 10.1007/s10265-010-0382-x
At5g45150 Ribonuclease that cleaves double-stranded RNA (dsRNA). No verified direct reference in this release
At1g01040 Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS).
Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana.2005 · DOI: 10.1007/s11103-004-6853-5
Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.2005 · DOI: 10.1016/j.cub.2005.07.024
The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.2006 · DOI: 10.1261/rna.2146906
A novel class of bacteria-induced small RNAs in Arabidopsis.2007 · DOI: 10.1101/gad.1595107
The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.2008 · DOI: 10.1073/pnas.0803356105
Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1.2008 · DOI: 10.1073/pnas.0805760105

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0271300 Cleaves double-stranded RNA (dsRNA). No verified direct reference in this release
Os06g0358800 Cleaves double-stranded RNA (dsRNA). No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006364rRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.768; coverage=93.275; evalue=1.99e-87; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030422siRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.768; coverage=93.275; evalue=1.99e-87; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.768; coverage=93.275; evalue=1.99e-87; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.768; coverage=93.275; evalue=1.99e-87; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.768; coverage=93.275; evalue=1.99e-87; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.768; coverage=93.275; evalue=1.99e-87; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004525ribonuclease III activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.768; coverage=93.275; evalue=1.99e-87; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.768; coverage=93.275; evalue=1.99e-87; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G20420KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.768; coverage=93.275; evalue=1.99e-87UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G45150KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.866; coverage=72.222; evalue=4.41e-41UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0271300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.986; coverage=85.088; evalue=4.13e-71UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os06g0358800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.023; coverage=76.608; evalue=1.02e-44UniProtKB/Swiss-Prot DAT 2026 current_release