Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_038192 |
|---|---|
| Query reference | OH1004 |
| Location | Chr09:33959605-33964630 (+) |
| Description | Similar to RRP6L3: Protein RRP6-like 3 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_038192 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 54 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g32415 |
Protein RRP6-like 3. | No verified direct reference in this release |
At5g35910 |
Acts as an important epigenetic regulator through multiple silencing mechanisms. | |
At1g54440 |
Acts as an important epigenetic regulator through multiple silencing mechanisms. |
Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana.2008 · DOI: 10.1128/mcb.02064-07
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000460 | maturation of 5.8S rRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000956 | nuclear-transcribed mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006346 | DNA methylation-dependent constitutive heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.461; coverage=42.052; evalue=5.24e-55; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.685; coverage=41.488; evalue=8.32e-56; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006396 | RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006401 | RNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031047 | regulatory ncRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=EXP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032211 | negative regulation of telomere maintenance via telomerase | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033621 | nuclear mRNA surveillance of meiosis-specific transcripts | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042274 | ribosomal small subunit biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043633 | polyadenylation-dependent RNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.685; coverage=41.488; evalue=8.32e-56; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070651 | nonfunctional rRNA decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071028 | nuclear mRNA surveillance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071034 | CUT catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071036 | nuclear polyadenylation-dependent snoRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071037 | nuclear polyadenylation-dependent snRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071038 | TRAMP-dependent tRNA surveillance pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071039 | nuclear polyadenylation-dependent CUT catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071040 | nuclear polyadenylation-dependent antisense transcript catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071042 | nuclear polyadenylation-dependent mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071044 | histone mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071051 | poly(A)-dependent snoRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080188 | gene silencing by siRNA-directed DNA methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.685; coverage=41.488; evalue=8.32e-56; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140746 | siRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903705 | positive regulation of siRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.461; coverage=42.052; evalue=5.24e-55; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904281 | positive regulation of transcription by RNA polymerase V | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.461; coverage=42.052; evalue=5.24e-55; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904872 | regulation of telomerase RNA localization to Cajal body | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905746 | positive regulation of mRNA cis splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990280 | RNA localization to chromatin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.461; coverage=42.052; evalue=5.24e-55; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000176 | nuclear exosome (RNase complex) | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000178 | exosome (RNase complex) | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000791 | euchromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005576 | extracellular region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.461; coverage=42.052; evalue=5.24e-55; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032040 | small-subunit processome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071920 | cleavage body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140602 | nucleolar peripheral inclusion body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990251 | nuclear exosome focus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990342 | heterochromatin island | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000166 | nucleotide binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000175 | 3'-5'-RNA exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003727 | single-stranded RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004532 | RNA exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070034 | telomerase RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G54440 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.461; coverage=42.052; evalue=5.24e-55 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G32415 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.773; coverage=104.735; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G35910 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.685; coverage=41.488; evalue=8.32e-56 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:313707 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.262; coverage=33.596; evalue=9.96e-49 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2543630 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.592; coverage=40.361; evalue=6.64e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release |