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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_037505
Query referenceOH1004
LocationChr09:12417464-12419600 (+)
DescriptionSimilar to FIE2: Polycomb group protein FIE1 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_037505 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 23 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g20740 Polycomb group (PcG) protein.
Polycomb group genes control pattern formation in plant seed.2001 · DOI: 10.1016/s0960-9822(01)00072-0

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0137100 Polycomb group (PcG) protein.
Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis.2013 · DOI: 10.1371/journal.pgen.1003322
OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.2014 · DOI: 10.1111/nph.12472
Os08g0137250 Polycomb group (PcG) protein.
Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.2012 · DOI: 10.1105/tpc.112.102269
Imprinted gene OsFIE1 modulates rice seed development by influencing nutrient metabolism and modifying genome H3K27me3.2016 · DOI: 10.1111/tpj.13202

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000122negative regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009793embryo development ending in seed dormancyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.655; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.655; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009910negative regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009960endosperm developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010048vernalization responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010231maintenance of seed dormancyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030154cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031507heterochromatin formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045815transcription initiation-coupled chromatin remodelingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048316seed developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.655; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090696post-embryonic plant organ developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0141044epigenetic programming in the endospermBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000014regulation of endosperm developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005677chromatin silencing complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031519PcG protein complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035098ESC/E(Z) complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043078polar nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001222transcription corepressor bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G20740KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.457; coverage=99.459; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os08g0137100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.089; coverage=100.27; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os08g0137250KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.655; coverage=100.27; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:9271694KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.655; coverage=100.27; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:542075KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=64.463; coverage=98.108; evalue=2.04e-180UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:542076KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.344; coverage=100.541; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release