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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_036249
Query referenceOH1004
LocationChr08:38575728-38586744 (-)
DescriptionSimilar to Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Nicotiana tabacum OX%3D4097)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_036249 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41710 Probably acts as a transcriptional activator. No verified direct reference in this release
UniProt: Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1. No verified direct reference in this release
At4g02960 Retrovirus-related Pol polyprotein from transposon RE2. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0389000 Transcription activator involved in the control of organ size.
A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway.2014 · DOI: 10.1093/pcp/pcu023
SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING Form a Complex to Integrate Auxin and Brassinosteroid Signaling in Rice.2017 · DOI: 10.1016/j.molp.2016.12.013
The RLA1/SMOS1 Transcription Factor Functions with OsBZR1 to Regulate Brassinosteroid Signaling and Rice Architecture.2017 · DOI: 10.1105/tpc.16.00611

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006310DNA recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.803; coverage=28.693; evalue=8.18e-89; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.816; coverage=21.493; evalue=3.89e-114; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006508proteolysisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.126; coverage=65.92; evalue=1.63e-127; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009734auxin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.459; coverage=19.733; evalue=2.12e-86; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009742brassinosteroid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.459; coverage=19.733; evalue=2.12e-86; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009873ethylene-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.816; coverage=21.493; evalue=3.89e-114; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009909regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.459; coverage=19.733; evalue=2.12e-86; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015074DNA integrationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.126; coverage=65.92; evalue=1.63e-127; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.816; coverage=21.493; evalue=3.89e-114; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.459; coverage=19.733; evalue=2.12e-86; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003676nucleic acid bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.126; coverage=65.92; evalue=1.63e-127; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.816; coverage=21.493; evalue=3.89e-114; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.816; coverage=21.493; evalue=3.89e-114; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003964RNA-directed DNA polymerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.126; coverage=65.92; evalue=1.63e-127; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004190aspartic-type endopeptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.126; coverage=65.92; evalue=1.63e-127; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004519endonuclease activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.126; coverage=65.92; evalue=1.63e-127; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=29.126; coverage=65.92; evalue=1.63e-127; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G41710KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.816; coverage=21.493; evalue=3.89e-114UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0389000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.459; coverage=19.733; evalue=2.12e-86UniProtKB/Swiss-Prot DAT 2026 current_release