Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_036082 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:35438436-35441116 (+) |
| Description | Similar to PTAC12: Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_036082 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 25 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g34640 |
Involved in plastid gene expression. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0769900 |
Required for the activity of the plastid-encoded RNA polymerase (PEP) and full expression of genes transcribed by PEP. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009266 | response to temperature stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009411 | response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009416 | response to light stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009585 | red, far-red light phototransduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009637 | response to blue light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009650 | UV protection | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009735 | response to cytokinin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010114 | response to red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010218 | response to far red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010468 | regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.262; coverage=97.17; evalue=1.91e-158; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030163 | protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042793 | plastid transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090228 | positive regulation of red or far-red light signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140922 | positive regulation of thermomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905421 | regulation of plant organ morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000427 | plastid-encoded plastid RNA polymerase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.262; coverage=97.17; evalue=1.91e-158; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042644 | chloroplast nucleoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003697 | single-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.262; coverage=97.17; evalue=1.91e-158; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003727 | single-stranded RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.262; coverage=97.17; evalue=1.91e-158; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140537 | transcription regulator activator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G34640 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.786; coverage=100.566; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0769900 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.362; coverage=95.849; evalue=2.22e-171 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4325601 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.362; coverage=95.849; evalue=2.22e-171 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | zma:100275546 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.262; coverage=97.17; evalue=1.91e-158 | UniProtKB/Swiss-Prot DAT 2026 current_release |