Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_035538 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:24312582-24319951 (-) |
| Description | Similar to PYD1: Dihydropyrimidine dehydrogenase (NADP(+))%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_035538 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 36 GO annotations and 8 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g17810 |
Involved in pyrimidine base degradation. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006145 | purine nucleobase catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006208 | pyrimidine nucleobase catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.465; coverage=41.858; evalue=9.87e-76; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006210 | thymine catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006212 | uracil catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006214 | thymidine catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006248 | CMP catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006249 | dCMP catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007584 | response to nutrient | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007623 | circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009410 | response to xenobiotic stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019483 | beta-alanine biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019860 | uracil metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042178 | xenobiotic catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043562 | cellular response to nitrogen levels | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046045 | TMP catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046050 | UMP catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046074 | dTMP catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISO:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046079 | dUMP catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.465; coverage=41.858; evalue=9.87e-76; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002058 | uracil binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003954 | NADH dehydrogenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.465; coverage=41.858; evalue=9.87e-76; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005506 | iron ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017113 | dihydropyrimidine dehydrogenase (NADP+) activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.465; coverage=41.858; evalue=9.87e-76; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050661 | NADP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051536 | iron-sulfur cluster binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.465; coverage=41.858; evalue=9.87e-76; UniProt GO evidence=IDA:EcoCyc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051539 | 4 iron, 4 sulfur cluster binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.465; coverage=41.858; evalue=9.87e-76; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0052620 | thymine dehydrogenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071949 | FAD binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G17810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.303; coverage=53.69; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ece:Z3402 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.465; coverage=41.858; evalue=9.87e-76 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ecj:JW2134 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.465; coverage=41.858; evalue=9.87e-76 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | eco:b2147 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.465; coverage=41.858; evalue=9.87e-76 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ecoc:C3026_12030 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.465; coverage=41.858; evalue=9.87e-76 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ecs:ECs_3039 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.465; coverage=41.858; evalue=9.87e-76 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:99586 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.798; coverage=42.748; evalue=3.68e-63 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | stm:STM2187 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.553; coverage=41.858; evalue=7.32e-74 | UniProtKB/Swiss-Prot DAT 2026 current_release |